5.9
CiteScore
5.9
Impact Factor

2013 Vol. 40, No. 12

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Review
Recent Advances in Super-Resolution Fluorescence Imaging and Its Applications in Biology
Rongcheng Han, Zhenghong Li, Yanyan Fan, Yuqiang Jiang
2013, 40(12): 583-595. doi: 10.1016/j.jgg.2013.11.003
Abstract (64) HTML PDF (1)
Abstract:
Fluorescence microscopy has become an essential tool for biological research because it can be minimally invasive, acquire data rapidly, and target molecules of interest with specific labeling strategies. However, the diffraction-limited spatial resolution, which is classically limited to about 200 nm in the lateral direction and about 500 nm in the axial direction, hampers its application to identify delicate details of subcellular structure. Extensive efforts have been made to break diffraction limit for obtaining high-resolution imaging of a biological specimen. Various methods capable of obtaining super-resolution images with a resolution of tens of nanometers are currently available. These super-resolution techniques can be generally divided into three primary classes: (1) patterned illumination-based super-resolution imaging, which employs spatially and temporally modulated illumination light to reconstruct sub-diffraction structures; (2) single-molecule localization-based super-resolution imaging, which localizes the profile center of each individual fluorophore at subdiffraction precision; (3) bleaching/blinking-based super-resolution imaging. These super-resolution techniques have been utilized in different biological fields and provide novel insights into several new aspects of life science. Given unique technical merits and commercial availability of super-resolution fluorescence microscope, increasing applications of this powerful technique in life science can be expected.
The Essential Role of Jasmonic Acid in Plant–Herbivore Interactions – Using the Wild Tobacco Nicotiana attenuata as a Model
Lei Wang, Jianqiang Wu
2013, 40(12): 597-606. doi: 10.1016/j.jgg.2013.10.001
Abstract (97) HTML PDF (1)
Abstract:
The plant hormone jasmonic acid (JA) plays a central role in plant defense against herbivores. Herbivore damage elicits a rapid and transient JA burst in the wounded leaves and JA functions as a signal to mediate the accumulation of various secondary metabolites that confer resistance to herbivores. Nicotiana attenuata is a wild tobacco species that inhabits western North America. More than fifteen years of study and its unique interaction with the specialist herbivore insect Manduca sexta have made this plant one of the best models for studying plant–herbivore interactions. Here we review the recent progress in understanding the elicitation of JA accumulation by herbivore-specific elicitors, the regulation of JA biosynthesis, JA signaling, and the herbivore-defense traits in N. attenuata.
Original research
Very Low-Level Heteroplasmy mtDNA Variations Are Inherited in Humans
Yan Guo, Chung-I Li, Quanhu Sheng, Jeanette F. Winther, Qiuyin Cai, John D. Boice, Yu Shyr
2013, 40(12): 607-615. doi: 10.1016/j.jgg.2013.10.003
Abstract (107) HTML PDF (1)
Abstract:
Little is known about the inheritance of very low heteroplasmy mitochondria DNA (mtDNA) variations. Even with the development of new next-generation sequencing methods, the practical lower limit of measured heteroplasmy is still about 1% due to the inherent noise level of the sequencing. In this study, we sequenced the mitochondrial genome of 44 individuals using Illumina high-throughput sequencing technology and obtained high-coverage mitochondria sequencing data. Our study population contains many mother–offspring pairs. This unique study design allows us to bypass the usual heteroplasmy limitation by analyzing the correlation of mutation levels at each position in the mtDNA sequence between maternally related pairs and non-related pairs. The study showed that very low heteroplasmy variants, down to almost 0.1%, are inherited maternally and that this inheritance begins to decrease at about 0.5%, corresponding to a bottleneck of about 200 mtDNA.
The Mesenchymal Stem Cells Derived from Transgenic Mice Carrying Human Coagulation Factor VIII Can Correct Phenotype in Hemophilia A Mice
Qing Wang, Xiuli Gong, Zhijuan Gong, Xiaoyie Ren, Zhaorui Ren, Shuzhen Huang, Yitao Zeng
2013, 40(12): 617-628. doi: 10.1016/j.jgg.2013.11.002
Abstract (74) HTML PDF (0)
Abstract:
Hemophilia A (HA) is an inherited X-linked recessive bleeding disorder caused by coagulant factor VIII (FVIII) deficiency. Previous studies showed that introduction of mesenchymal stem cells (MSCs) modified by FVIII-expressing retrovirus may result in phenotypic correction of HA animals. This study aimed at the investigation of an alternative gene therapy strategy that may lead to sustained FVIII transgene expression in HA mice. B-domain-deleted human FVIII (hFVIIIBD) vector was microinjected into single-cell embryos of wild-type mice to generate a transgenic mouse line, from which hFVIIIBD-MSCs were isolated, followed by transplantation into HA mice. RT-PCR and real-time PCR analysis demonstrated the expression of hFVIIIBD in multi-organs of recipient HA mice. Immunohistochemistry showed the presence of hFVIIIBD positive staining in multi-organs of recipient HA mice. ELISA indicated that plasma hFVIIIBD level in recipient mice reached its peak (77 ng/mL) at the 3rd week after implantation, and achieved sustained expression during the 5-week observation period. Plasma FVIII activities of recipient HA mice increased from 0% to 32% after hFVIIIBD-MSCs transplantation. APTT (activated partial thromboplastin time) value decreased in hFVIIIBD-MSCs transplanted HA mice compared with untreated HA mice (45.5 s vs. 91.3 s). Our study demonstrated an effective phenotypic correction in HA mice using genetically modified MSCs from hFVIIIBD transgenic mice.
QTL Scanning for Rice Yield Using a Whole Genome SNP Array
Cong Tan, Zhongmin Han, Huihui Yu, Wei Zhan, Weibo Xie, Xun Chen, Hu Zhao, Fasong Zhou, Yongzhong Xing
2013, 40(12): 629-638. doi: 10.1016/j.jgg.2013.06.009
Abstract (76) HTML PDF (0)
Abstract:
High-throughput SNP genotyping is widely used for plant genetic studies. Recently, a RICE6K SNP array has been developed based on the Illumina Bead Array platform and Infinium SNP assay technology for genome-wide evaluation of allelic variations and breeding applications. In this study, the RICE6K SNP array was used to genotype a recombinant inbred line (RIL) population derived from the cross between the indica variety, Zhenshan 97, and the japonica variety, Xizang 2. A total of 3324 SNP markers of high quality were identified and were grouped into 1495 recombination bins in the RIL population. A high-density linkage map, consisting of the 1495 bins, was developed, covering 1591.2 cM and with average length of 1.1 cM per bin. Segregation distortions were observed in 24 regions of the 11 chromosomes in the RILs. One half of the distorted regions contained fertility genes that had been previously reported. A total of 23 QTLs were identified for yield. Seven QTLs were firstly detected in this study. The positive alleles from about half of the identified QTLs came from Zhenshan 97 and they had lower phenotypic values than Xizang 2. This indicated that favorable alleles for breeding were dispersed in both parents and pyramiding favorable alleles could develop elite lines. The size of the mapping population for QTL analysis using high throughput SNP genotyping platform is also discussed.
Letter to the Editor
QcReads: An Adapter and Quality Trimming Tool for Next-Generation Sequencing Reads
Yunfei Ma, Haibing Xie, Xuman Han, David M. Irwin, Ya-Ping Zhang
2013, 40(12): 639-642. doi: 10.1016/j.jgg.2013.11.001
Abstract (112) HTML PDF (1)
Abstract: