5.9
CiteScore
5.9
Impact Factor

2016 Vol. 43, No. 4

Review
Retromer-Mediated Protein Sorting and Vesicular Trafficking
Jia-Jia Liu
2016, 43(4): 165-177. doi: 10.1016/j.jgg.2016.02.006
Abstract (88) HTML PDF (5)
Abstract:
Retromer is an evolutionarily conserved multimeric protein complex that mediates intracellular transport of various vesicular cargoes and functions in a wide variety of cellular processes including polarized trafficking, developmental signaling and lysosome biogenesis. Through its interaction with the Rab GTPases and their effectors, membrane lipids, molecular motors, the endocytic machinery and actin nucleation promoting factors, retromer regulates sorting and trafficking of transmembrane proteins from endosomes to the trans-Golgi network (TGN) and the plasma membrane. In this review, I highlight recent progress in the understanding of retromer-mediated protein sorting and vesicle trafficking and discuss how retromer contributes to a diverse set of developmental, physiological and pathological processes.
Original research
The Ecdysone and Notch Pathways Synergistically Regulate Cut at the Dorsal–Ventral Boundary in Drosophila Wing Discs
Dongyu Jia, Jamal Bryant, Allison Jevitt, Gabriel Calvin, Wu-Min Deng
2016, 43(4): 179-186. doi: 10.1016/j.jgg.2016.03.002
Abstract (60) HTML PDF (1)
Abstract:
Metazoan development requires coordination of signaling pathways to regulate patterns of gene expression. In Drosophila, the wing imaginal disc provides an excellent model for the study of how signaling pathways interact to regulate pattern formation. The determination of the dorsal–ventral (DV) boundary of the wing disc depends on the Notch pathway, which is activated along the DV boundary and induces the expression of the homeobox transcription factor, Cut. Here, we show that Broad (Br), a zinc-finger transcription factor, is also involved in regulating Cut expression in the DV boundary region. However, Br expression is not regulated by Notch signaling in wing discs, while ecdysone signaling is the upstream signal that induces Br for Cut upregulation. Also, we find that the ecdysone-Br cascade upregulates cut-lacZ expression, a reporter containing a 2.7 kb cut enhancer region, implying that ecdysone signaling, similar to Notch, regulates cut at the transcriptional level. Collectively, our findings reveal that the Notch and ecdysone signaling pathways synergistically regulate Cut expression for proper DV boundary formation in the wing disc. Additionally, we showbr promotes Delta, a Notch ligand, near the DV boundary to suppress aberrant high Notch activity, indicating further interaction between the two pathways for DV patterning of the wing disc.
The Protein Arginine Methylase 5 (PRMT5/SKB1) Gene Is Required for the Maintenance of Root Stem Cells in Response to DNA Damage
Qiuling Li, Yan Zhao, Minghui Yue, Yongbiao Xue, Shilai Bao
2016, 43(4): 187-197. doi: 10.1016/j.jgg.2016.02.007
Abstract (86) HTML PDF (1)
Abstract:
Plant root stem cells and their surrounding microenvironment, namely the stem cell niche, are hypersensitive to DNA damage. However, the molecular mechanisms that help maintain the genome stability of root stem cells remain elusive. Here we show that the root stem cells in the skb1 (Shk1 kinase binding protein 1) mutant undergoes DNA damage-induced cell death, which is enhanced when combined with a lesion of the Ataxia-telangiectasia mutated (ATM) or the ATM/RAD3-related (ATR) genes, suggesting that the SKB1 plays a synergistically effect with ATM and ATR in DNA damage pathway. We also provide evidence that SKB1 is required for the maintenance of quiescent center (QC), a root stem cell niche, under DNA damage treatments. Furthermore, we report decreased and ectopic expression of SHORTROOT (SHR) in response to DNA damage in the skb1 root tips, while the expression of SCARECROW (SCR) remains unaffected. Our results uncover a new mechanism of plant root stem cell maintenance under DNA damage conditions that requires SKB1.
Identification and Physical Mapping of New PCR-Based Markers Specific for the Long Arm of Rye (Secale cereale L.) Chromosome 6
Meng Li, Zongxiang Tang, Ling Qiu, Yangyang Wang, Shuyao Tang, Shulan Fu
2016, 43(4): 199-206. doi: 10.1016/j.jgg.2015.11.005
Abstract (78) HTML PDF (1)
Abstract:
To effectively use elite genes on the long arm of rye chromosome 6 (the 6RL arm) in wheat breeding programs, precise and fast identification of 6RL chromatin in wheat backgrounds is necessary. PCR-based 6RL-specific markers can facilitate the detection of elite genes on 6RL in wheat breeding. However, only a limited number of 6RL-specific markers have been developed. In the present study, 300 new PCR-based 6RL-specific markers were identified using specific length amplified fragment sequencing (SLAF-seq) technology, and were further physically mapped to four regions on the 6RL arm using 6R and 6RL deletion lines. Interestingly, 127 of the 300 markers were physically localized to a region from the site between 2.3 and 2.5 to the telomere, the same region where the powdery mildew resistance gene was mapped. In addition, 95 of the 300 markers exhibit polymorphisms, which can be used to investigate the diversity of rye 6RL arms. The markers developed in this study can be used to identify given segments of 6RL in wheat backgrounds and accelerate the utilization of elite genes on 6RL in wheat breeding.
Method
Construction and Validation of a Dual-Transgene Vector System for Stable Transformation in Plants
Zhimin He, Bin Liu, Xu Wang, Mingdi Bian, Reqing He, Jindong Yan, Ming Zhong, Xiaoying Zhao, Xuanming Liu
2016, 43(4): 207-215. doi: 10.1016/j.jgg.2016.02.005
Abstract (93) HTML PDF (1)
Abstract:
In this study, we constructed dual-transgene vectors (pDT1, pDT7, and pDT7G) that simultaneously co-expressed two genes in plants. ACTIN2 and UBQ10 promoters were used to control the expression of these two genes. The 4×Myc, 3×HA, and 3×Flag reporter genes allowed for the convenient identification of a tunable co-expression system in plants, whereas the dexamethasone (Dex) inducible reporter gene C-terminus of the glucocorticoid receptor (cGR) provided Dex-dependent translocation of the fusion gene between the nucleus and cytoplasm. The function of pDT vectors was validated using four pairwise genes in Nicotiana benthamiana or Arabidopsis thaliana. The co-expression efficiency of two genes from the pDT1 and pDT7G vectors was 35% and 42%, respectively, which ensured the generation of sufficient transgenic materials. These pDT vectors are simple, reliable, efficient, and time-saving tools for the co-expression of two genes through a single transformation event and can be used in the study of protein–protein interactions or multi-component complexes.
Letter to the Editor
Chloroplast DNA Underwent Independent Selection from Nuclear Genes during Soybean Domestication and Improvement
Chao Fang, Yanming Ma, Lichai Yuan, Zheng Wang, Rui Yang, Zhengkui Zhou, Tengfei Liu, Zhixi Tian
2016, 43(4): 217-221. doi: 10.1016/j.jgg.2016.01.005
Abstract (115) HTML PDF (4)
Abstract:
A Truncated F-Box Protein Confers the Dwarfism in Cucumber
Tao Lin, Shenhao Wang, Yang Zhong, Dongli Gao, Qingzhi Cui, Huiming Chen, Zhonghua Zhang, Huolin Shen, Yiqun Weng, Sanwen Huang
2016, 43(4): 223-226. doi: 10.1016/j.jgg.2016.01.007
Abstract (93) HTML PDF (3)
Abstract: