5.9
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5.9
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2017 Vol. 44, No. 1

Editorial
Editorial
Yongbiao Xue
2017, 44(1) doi: 10.1016/j.jgg.2017.01.002
Abstract (46) HTML PDF (1)
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Perspective
Characteristics and processing of Pol IV-dependent transcripts in Arabidopsis
Hsuan Yu Kuo, Elise L. Jacobsen, Yanping Long, Xinyuan Chen, Jixian Zhai
2017, 44(1): 3-6. doi: 10.1016/j.jgg.2016.10.009
Abstract (75) HTML PDF (2)
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Review
Genetics and pathophysiology of mammalian sulfate biology
Rachel Langford, Elizabeth Hurrion, Paul A. Dawson
2017, 44(1): 7-20. doi: 10.1016/j.jgg.2016.08.001
Abstract (71) HTML PDF (2)
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Nutrient sulfate is essential for numerous physiological functions in mammalian growth and development. Accordingly, disruptions to any of the molecular processes that maintain the required biological ratio of sulfonated and unconjugated substrates are likely to have detrimental consequences for mammalian physiology. Molecular processes of sulfate biology can be broadly grouped into four categories: firstly, intracellular sulfate levels are maintained by intermediary metabolism and sulfate transporters that mediate the transfer of sulfate across the plasma membrane; secondly, sulfate is converted to 3′-phosphoadenosine 5′-phosphosulfate (PAPS), which is the universal sulfonate donor for all sulfonation reactions; thirdly, sulfotransferases mediate the intracellular sulfonation of endogenous and exogenous substrates; fourthly, sulfate is removed from substrates via sulfatases. From the literature, we curated 91 human genes that encode all known sulfate transporters, enzymes in pathways of sulfate generation, PAPS synthetases and transporters, sulfotransferases and sulfatases, with a focus on genes that are linked to human and animal pathophysiology. The predominant clinical features linked to these genes include neurological dysfunction, skeletal dysplasias, reduced fecundity and reproduction, and cardiovascular pathologies. Collectively, this review provides reference information for genetic investigations of perturbed mammalian sulfate biology.
Drug resistance mechanisms and novel drug targets for tuberculosis therapy
Md Mahmudul Islam, H.M. Adnan Hameed, Julius Mugweru, Chiranjibi Chhotaray, Changwei Wang, Yaoju Tan, Jianxiong Liu, Xinjie Li, Shouyong Tan, Iwao Ojima, Wing Wai Yew, Eric Nuermberger, Gyanu Lamichhane, Tianyu Zhang
2017, 44(1): 21-37. doi: 10.1016/j.jgg.2016.10.002
Abstract (168) HTML PDF (11)
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Drug - resistant tuberculosis (TB) poses a significant challenge to the successful treatment and control of TB worldwide. Resistance to anti - TB drugs has existed since the beginning of the chemotherapy era. New insights into the resistant mechanisms of anti - TB drugs have been provided. Better understanding of drug resistance mechanisms helps in the development of new tools for the rapid diagnosis of drug - resistant TB. There is also a pressing need in the development of new drugs with novel targets to improve the current treatment of TB and to prevent the emergence of drug resistance in Mycobacterium tuberculosis. This review summarizes the anti - TB drug resistance mechanisms, furnishes some possible novel drug targets in the development of new agents for TB therapy and discusses the usefulness using known targets to develop new anti - TB drugs. Whole genome sequencing is currently an advanced technology to uncover drug resistance mechanisms in M. tuberculosis. However, further research is required to unravel the significance of some newly discovered gene mutations in their contribution to drug resistance.
Original research
CAMSAP3-dependent microtubule dynamics regulates Golgi assembly in epithelial cells
Jing Wang, Honglin Xu, Yuqiang Jiang, Mikiko Takahashi, Masatoshi Takeichi, Wenxiang Meng
2017, 44(1): 39-49. doi: 10.1016/j.jgg.2016.11.005
Abstract (90) HTML PDF (3)
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The Golgi assembly pattern varies among cell types. In fibroblast cells, the Golgi apparatus concentrates around the centrosome that radiates microtubules; whereas in epithelial cells, whose microtubules are mainly noncentrosomal, the Golgi apparatus accumulates around the nucleus independently of centrosome. Little is known about the mechanisms behind such cell type-specific Golgi and microtubule organization. Here, we show that the microtubule minus-end binding protein Nezha/CAMSAP3 (calmodulin-regulated spectrin-associated protein 3) plays a role in translocation of Golgi vesicles in epithelial cells. This function of CAMSAP3 is supported by CG-NAP (centrosome and Golgi localized PKN-associated protein) through their binding. Depletion of either one of these proteins similarly induces fragmentation of Golgi membranes. Furthermore, we find that stathmin-dependent microtubule dynamics is graded along the radial axis of cells with highest activity at the perinuclear region, and inhibition of this gradient disrupts perinuclear distribution of the Golgi apparatus. We propose that the assembly of the Golgi apparatus in epithelial cells is induced by a multi-step process, which includes CAMSAP3-dependent Golgi vesicle clustering and graded microtubule dynamics.
Sequencing and comparative analyses of Aegilops tauschii chromosome arm 3DS reveal rapid evolution of Triticeae genomes
Jingzhong Xie, Naxin Huo, Shenghui Zhou, Yi Wang, Guanghao Guo, Karin R. Deal, Shuhong Ouyang, Yong Liang, Zhenzhong Wang, Lichan Xiao, Tingting Zhu, Tiezhu Hu, Vijay Tiwari, Jianwei Zhang, Hongxia Li, Zhongfu Ni, Yingyin Yao, Huiru Peng, Shengli Zhang, Olin D. Anderson, Patrick E. McGuire, Jan Dvorak, Ming-Cheng Luo, Zhiyong Liu, Yong Q. Gu, Qixin Sun
2017, 44(1): 51-61. doi: 10.1016/j.jgg.2016.09.005
Abstract (70) HTML PDF (2)
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Bread wheat (Triticum aestivum, AABBDD) is an allohexaploid species derived from two rounds of interspecific hybridizations. A high-quality genome sequence assembly of diploid Aegilops tauschii, the donor of the wheat D genome, will provide a useful platform to study polyploid wheat evolution. A combined approach of BAC pooling and next-generation sequencing technology was employed to sequence the minimum tiling path (MTP) of 3176 BAC clones from the short arm of Ae. tauschii chromosome 3 (At3DS). The final assembly of 135 super-scaffolds with an N50 of 4.2 Mb was used to build a 247-Mb pseudomolecule with a total of 2222 predicted protein-coding genes. Compared with the orthologous regions of rice, Brachypodium, and sorghum, At3DS contains 38.67% more genes. In comparison to At3DS, the short arm sequence of wheat chromosome 3B (Ta3BS) is 95-Mb large in size, which is primarily due to the expansion of the non-centromeric region, suggesting that transposable element (TE) bursts in Ta3B likely occurred there. Also, the size increase is accompanied by a proportional increase in gene number in Ta3BS. We found that in the sequence of short arm of wheat chromosome 3D (Ta3DS), there was only less than 0.27% gene loss compared to At3DS. Our study reveals divergent evolution of grass genomes and provides new insights into sequence changes in the polyploid wheat genome.
Letter to the editor
Autism-related protein MeCP2 regulates FGF13 expression and emotional behaviors
Bo Yuan, Tian-lin Cheng, Kan Yang, Xu Zhang, Zilong Qiu
2017, 44(1): 63-66. doi: 10.1016/j.jgg.2016.10.004
Abstract (128) HTML PDF (3)
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Drosophila ubiquitin E3 ligase dSmurf is required for synapse remodeling and axon pruning by glia
Changyan Chen, Shuai Yin, Wenze Cao, Margaret S. Ho
2017, 44(1): 67-70. doi: 10.1016/j.jgg.2016.10.007
Abstract (74) HTML PDF (10)
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Targeted mutagenesis in rice using CRISPR-Cpf1 system
Xixun Hu, Chun Wang, Qing Liu, Yaping Fu, Kejian Wang
2017, 44(1): 71-73. doi: 10.1016/j.jgg.2016.12.001
Abstract (102) HTML PDF (15)
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