Binder, J.X., Pletscher-Frankild, S., Tsafou, K., Stolte, C., O'Donoghue, S.I., Schneider, R., Jensen, L.J., 2014. Compartments: unification and visualization of protein subcellular localization evidence. Database 2014, bau012.
|
Diesh, C., Stevens, G.J., Xie, P., De Jesus Martinez, T., Hershberg, E.A., Leung, A., Guo, E., Dider, S., Zhang, J., Bridge, C., et al., 2023. Jbrowse 2: a modular genome browser with views of synteny and structural variation. Genome Biol. 24, 74.
|
Food and Agriculture Organization of the United Nations., 2020. The State of World Fisheries and Aquaculture 2020: Sustainability in Action. F. A. O.
|
Gasteiger, E., Jung, E., Bairoch, A., 2001. Swiss-prot: connecting biomolecular knowledge via a protein database. Curr. Issues Mol. Biol. 3, 47-55.
|
Guo, C., Duan, Y., Ye, W., Zhang, W., Cheng, Y., Shi, M., Xia, X.Q., 2023a. FishGET: a fish gene expression and transcriptome database with improved accuracy and visualization. iScience. 26, 106539.
|
Guo, C., Ye, W., Cao, D., Shi, M., Zhang, W., Cheng, Y., Wang, Y., Xia, X.Q., 2024. Unraveling the stereoscopic gene transcriptional landscape of zebrafish using fishsed, a fish spatial expression database with multispecies scalability. Sci. China Life Sci. 67, 843-846.
|
Guo, C., Ye, W., Shi, M., Duan, Y., Zhang, W., Cheng, Y., Xia, X.Q., 2023b. Fishsct: a zebrafish-centric database for exploration and visualization of fish single-cell transcriptome. Sci. China Life Sci. 66, 2185-2188.
|
Hayward, N.K., Wilmott, J.S., Waddell, N., Johansson, P.A., Field, M.A., Nones, K., Patch, A.M., Kakavand, H., Alexandrov, L.B., Burke, H., et al., 2017. Whole-genome landscapes of major melanoma subtypes. Nature 545, 175-180.
|
Kramer, A.C., Gurdziel, K.,Thummel, R., 2021. A comparative analysis of gene and protein expression throughout a full 28-day retinal regeneration time-course in adult zebrafish. Front. Cell Dev. Biol. 9, 741514.
|
Kumar, S., Suleski, M., Craig, J.M., Kasprowicz, A.E., Sanderford, M., Li, M., Stecher, G.,Hedges, S.B., 2022. Timetree 5: an expanded resource for species divergence times. Mol. Biol. Evol. 39.
|
Li, H., Shi, M., Ren, K., Zhang, L., Ye, W., Zhang, W., Cheng, Y., Xia, X.Q., 2023. Visual omics: a web-based platform for omics data analysis and visualization with rich graph-tuning capabilities. Bioinformatics 39.
|
Papatheodorou, I., Moreno, P., Manning, J., Fuentes, A.M., George, N., Fexova, S., Fonseca, N.A., Fullgrabe, A., Green, M., Huang, N., et al., 2020. Expression atlas update: from tissues to single cells. Nucleic Acids Res. 48, D77-d83.
|
Pasquier, J., Cabau, C., Nguyen, T., Jouanno, E., Severac, D., Braasch, I., Journot, L., Pontarotti, P., Klopp, C., Postlethwait, J.H., et al., 2016. Gene evolution and gene expression after whole genome duplication in fish: the phylofish database. BMC Genom. 17, 368.
|
Sprague, J., Doerry, E., Douglas, S., Westerfield, M., 2001. The zebrafish information network (zfin): a resource for genetic, genomic and developmental research. Nucleic Acids Res. 29, 87-90.
|
Szklarczyk, D., Kirsch, R., Koutrouli, M., Nastou, K., Mehryary, F., Hachilif, R., Gable, A.L., Fang, T., Doncheva, N.T., Pyysalo, S., et al., 2023. The string database in 2023: protein-protein association networks and functional enrichment analyses for any sequenced genome of interest. Nucleic Acids Res. 51, D638-d646.
|