Abecasis, G.R., Cherny, S.S., Cookson, W.O., Cardon, L.R., 2002. Merlin-rapid analysis of dense genetic maps using sparse gene flow trees. Nat. Genet. 30, 97-101.
|
Amato, A.A., Jackson, C.E., Ridings, L.W., Barohn, R.J., 1995. Childhood-onset oculopharyngodistal myopathy with chronic intestinal pseudo-obstruction. Muscle Nerve 18, 842-847.
|
Barbe, L., Lanni, S., Lopez-Castel, A., Franck, S., Spits, C., Keymolen, K., Seneca, S., Tome, S., Miron, I., Letourneau, J., et al., 2017. CpG Methylation, a parent-of-origin effect for maternal-biased transmission of congenital myotonic dystrophy. Am. J. Hum. Genet. 100, 488-505.
|
Benson, G., 1999. Tandem repeats finder: a program to analyze DNA sequences. Nucleic Acids Res. 27, 573-580.
|
Boivin, M., Deng, J., Pfister, V., Grandgirard, E., Oulad-Abdelghani, M., Morlet, B., Ruffenach, F., Negroni, L., Koebel, P., Jacob, H., et al., 2021. Translation of GGC repeat expansions into a toxic polyglycine protein in NIID defines a novel class of human genetic disorders: The polyG diseases. Neuron 109, 1825-1835.
|
Brais, B., Bouchard, J.P., Xie, Y.G., Rochefort, D.L., Chretien, N., Tome, F.M., Lafreniere, R.G., Rommens, J.M., Uyama, E., Nohira, O., et al., 1998. Short GCG expansions in the PABP2 gene cause oculopharyngeal muscular dystrophy. Nat. Genet. 18, 164-167.
|
Brook, J.D., McCurrach, M.E., Harley, H.G., Buckler, A.J., Church, D., Aburatani, H., Hunter, K., Stanton, V.P., Thirion, J.P., Hudson, T., et al., 1992. Molecular basis of myotonic dystrophy: expansion of a trinucleotide (CTG) repeat at the 3' end of a transcript encoding a protein kinase family member. Cell 68, 799-808.
|
Consortium., G.M.o.H.s.D.G.-H., E.a., Consortium., G.M.o.H.s.D.G.-H., 2019. CAG repeat not polyglutamine length determines timing of huntington's disease onset. Cell 178, 887-900.
|
Deng, J., Yu, J., Li, P., Luan, X., Cao, L., Zhao, J., Yu, M., Zhang, W., Lv, H., Xie, Z., et al., 2020. Expansion of GGC Repeat in GIPC1 is associated with oculopharyngodistal myopathy. Am. J. Hum. Genet. 106, 793-804.
|
Durmus, H., Laval, S.H., Deymeer, F., Parman, Y., Kiyan, E., Gokyigiti, M., Ertekin, C., Ercan, I., Solakoglu, S., Karcagi, V., et al., 2011. Oculopharyngodistal myopathy is a distinct entity: clinical and genetic features of 47 patients. Neurology 76, 227-235.
|
Fan, Y., Shen, S., Yang, J., Yao, D., Li, M., Mao, C., Wang, Y., Hao, X., Ma, D., Li, J., et al., 2022. GIPC1 CGG repeat expansion is associated with movement disorders. Ann. Neurol. 91, 704-715.
|
Fischer, D., Kley, R.A., Strach, K., Meyer, C., Sommer, T., Eger, K., Rolfs, A., Meyer, W., Pou, A., Pradas, J., et al., 2008. Distinct muscle imaging patterns in myofibrillar myopathies. Neurology 71, 758-765.
|
Gu, X., Yu, J., Jiao, K., Deng, J., Xia, X., Qiao, K., Yue, D., Gao, M., Zhao, C., Dong, J., et al., 2023. Non-coding CGG repeat expansion in LOC642361/NUTM2B-AS1 is associated with a phenotype of oculopharyngodistal myopathy. J. Med. Genet. jmg-2023-109345.
|
Hagerman, R.J., Leehey, M., Heinrichs, W., Tassone, F., Wilson, R., Hills, J., Grigsby, J., Gage, B., Hagerman, P.J., 2001. Intention tremor, parkinsonism, and generalized brain atrophy in male carriers of fragile X. Neurology 57, 127-130.
|
He, J., Liu, X.X., Ma, M.M., Lin, J.J., Fu, J., Chen, Y.K., Xu, G.R., Xu, L.Q., Fu, Z.F., Xu, D., et al., 2022. Heterozygous seryl-tRNA synthetase 1 variants cause Charcot-Marie-Tooth disease. Ann. Neurol. 93, 244-256.
|
Ishiura, H., Shibata, S., Yoshimura, J., Suzuki, Y., Qu, W., Doi, K., Almansour, M.A., Kikuchi, J.K., Taira, M., Mitsui, J., et al., 2019. Noncoding CGG repeat expansions in neuronal intranuclear inclusion disease, oculopharyngodistal myopathy and an overlapping disease. Nat. Genet. 51, 1222-1232.
|
Kaufman, K.K., Heckert, E.W., 1954. Dystrophia myotonica with associated sprue-like symptoms. Am. J. Med. 16, 614-616.
|
Kent, W.J., 2002. BLAT--the BLAST-like alignment tool. Genome Res. 12, 656-664.
|
Kremer, E.J., Pritchard, M., Lynch, M., Yu, S., Holman, K., Baker, E., Warren, S.T., Schlessinger, D., Sutherland, G.R., Richards, R.I., 1991. Mapping of DNA instability at the fragile X to a trinucleotide repeat sequence p(CCG)n. Science 252, 1711-1714.
|
Kume, K., Kurashige, T., Muguruma, K., Morino, H., Tada, Y., Kikumoto, M., Miyamoto, T., Akutsu, S.N., Matsuda, Y., Matsuura, S., et al., 2023. CGG repeat expansion in LRP12 in amyotrophic lateral sclerosis. Am. J. Hum. Genet. 110, 1086-1097.
|
Kumutpongpanich, T., Ogasawara, M., Ozaki, A., Ishiura, H., Tsuji, S., Minami, N., Hayashi, S., Noguchi, S., Iida, A., Nishino, I., et al., 2021. Clinicopathologic features of oculopharyngodistal myopathy with LRP12 CGG repeat expansions compared with other oculopharyngodistal myopathy subtypes. JAMA Neurol. 78, 853-863.
|
Li, H., 2016. Minimap and miniasm: fast mapping and de novo assembly for noisy long sequences. Bioinformatics 32, 2103-2110.
|
Li, H., 2018. Minimap2: pairwise alignment for nucleotide sequences. Bioinformatics 34, 3094-3100.
|
Li, L.C., Dahiya, R., 2002. MethPrimer: designing primers for methylation PCRs. Bioinformatics 18, 1427-1431.
|
Liu, Y., Lu, J., Li, K., Zhao, H., Feng, Y., Zhang, Z., Hu, L., Li, G., Shao, Y., Wang, Y., 2019. A multimodal imaging features of the brain in adult-onset neuronal intranuclear inclusion disease. Neurol. Sci. 40, 1495-1497.
|
Magoc, T., Salzberg, S.L., 2011. FLASH: fast length adjustment of short reads to improve genome assemblies. Bioinformatics 27, 2957-2963.
|
Mignarri, A., Carluccio, M.A., Malandrini, A., Sicurelli, F., Galli, L., Mazzei, M.A., Federico, A., Orrico, A., Dotti, M.T., 2012. The first Italian patient with oculopharyngodistal myopathy: case report and considerations on differential diagnosis. Neuromuscul. Disord. 22, 759-762.
|
Nakano, Y., Takahashi-Fujigasaki, J., Sengoku, R., Kanemaru, K., Arai, T., Kanda, T., Murayama, S., 2017. PML nuclear bodies are altered in adult-onset neuronal intranuclear hyaline inclusion disease. J. Neuropathol. Exp. Neurol. 76, 585-594.
|
Ogasawara, M., Iida, A., Kumutpongpanich, T., Ozaki, A., Oya, Y., Konishi, H., Nakamura, A., Abe, R., Takai, H., Hanajima, R., et al., 2020. CGG expansion in NOTCH2NLC is associated with oculopharyngodistal myopathy with neurological manifestations. Acta Neuropathol. Commun. 8, 204.
|
Pan, Y., Xue, J., Chen, J., Zhang, X., Tu, T., Xiao, Q., Huang, W., Liu, Q., Zhu, L., Li, J., et al., 2022. Assessment of GGC repeat expansion in GIPC1 in patients with Parkinson's disease. Mov. Disord. 37, 1557-1559.
|
Paulson, H., 2018. Repeat expansion diseases. Handb. Clin. Neurol. 147, 105-123.
|
Quinlan, A.R., Hall, I.M., 2010. BEDTools: a flexible suite of utilities for comparing genomic features. Bioinformatics 26, 841-842.
|
Rang, F.J., Kloosterman, W.P., de Ridder, J., 2018. From squiggle to basepair: computational approaches for improving nanopore sequencing read accuracy. Genome. Biol. 19, 90.
|
Ross-Inta, C., Omanska-Klusek, A., Wong, S., Barrow, C., Garcia-Arocena, D., Iwahashi, C., Berry-Kravis, E., Hagerman, R.J., Hagerman, P.J., Giulivi, C., 2010. Evidence of mitochondrial dysfunction in fragile X-associated tremor/ataxia syndrome. Biochem. J. 429, 545-552.
|
Sellier, C., Buijsen, R.A.M., He, F., Natla, S., Jung, L., Tropel, P., Gaucherot, A., Jacobs, H., Meziane, H., Vincent, A., et al., 2017. Translation of expanded CGG repeats into FMR polyG is pathogenic and may contribute to fragile X Tremor Ataxia Syndrome. Neuron 93, 331-347.
|
Sone, J., Mori, K., Inagaki, T., Katsumata, R., Takagi, S., Yokoi, S., Araki, K., Kato, T., Nakamura, T., Koike, H., et al., 2016. Clinicopathological features of adult-onset neuronal intranuclear inclusion disease. Brain 139, 3170-3186.
|
Sugiyama, A., Sato, N., Kimura, Y., Maekawa, T., Enokizono, M., Saito, Y., Takahashi, Y., Matsuda, H., Kuwabara, S., 2017. MR imaging features of the cerebellum in adult-onset neuronal intranuclear inclusion disease: 8 cases. AJNR. Am. J. Neuroradiol. 38, 2100-2104.
|
Sun, Q.Y., Xu, Q., Tian, Y., Hu, Z.M., Qin, L.X., Yang, J.X., Huang, W., Xue, J., Li, J.C., Zeng, S., et al., 2020. Expansion of GGC repeat in the human-specific NOTCH2NLC gene is associated with essential tremor. Brain 143, 222-233.
|
Tian, Y., Wang, J.L., Huang, W., Zeng, S., Jiao, B., Liu, Z., Chen, Z., Li, Y., Wang, Y., Min, H.X., et al., 2019. Expansion of human-specific GGC repeat in neuronal intranuclear inclusion disease-related disorders. Am. J. Hum. Genet. 105, 166-176.
|
Todd, P.K., Oh, S.Y., Krans, A., He, F., Sellier, C., Frazer, M., Renoux, A.J., Chen, K.C., Scaglione, K.M., Basrur, V., et al., 2013. CGG repeat-associated translation mediates neurodegeneration in fragile X tremor ataxia syndrome. Neuron 78, 440-455.
|
Tokimura, R., Hashimoto Maeda, M., Mitsutake, A., Sakai, S., Suzuki, F., Sugasawa, K., Fujimoto, C., Ishiura, H., Toda, T., 2022. Isolated paravermal hyperintensities in neuronal intranuclear inclusion disease. Neurology 98, 938-939.
|
Travers, K.J., Chin, C.S., Rank, D.R., Eid, J.S., Turner, S.W., 2010. A flexible and efficient template format for circular consensus sequencing and SNP detection. Nucleic Acids Res. 38, e159.
|
van Dellen, A., Blakemore, C., Deacon, R., York, D., Hannan, A.J., 2000. Delaying the onset of Huntington's in mice. Nature 404, 721-722.
|
van der Sluijs, B.M., ter Laak, H.J., Scheffer, H., van der Maarel, S.M., van Engelen, B.G., 2004. Autosomal recessive oculopharyngodistal myopathy: a distinct phenotypical, histological, and genetic entity. J. Neurol. Neurosurg. Psychiatry 75, 1499-1501.
|
Verkerk, A.J., Pieretti, M., Sutcliffe, J.S., Fu, Y.H., Kuhl, D.P., Pizzuti, A., Reiner, O., Richards, S., Victoria, M.F., Zhang, F.P., et al., 1991. Identification of a gene (FMR-1) containing a CGG repeat coincident with a breakpoint cluster region exhibiting length variation in fragile X syndrome. Cell 65, 905-914.
|
Wang, Z., Qiu, L., Lin, M., Chen, L., Zheng, F., Lin, L., Lin, F., Ye, Z., Lin, X., He, J., et al., 2022. Prevalence and disease progression of genetically-confirmed facioscapulohumeral muscular dystrophy type 1 (FSHD1) in China between 2001 and 2020: a nationwide population-based study. Lancet Reg. Health West. Pac. 18, 100323.
|
Xi, J., Wang, X., Yue, D., Dou, T., Wu, Q., Lu, J., Liu, Y., Yu, W., Qiao, K., Lin, J., et al., 2020. 5' UTR CGG repeat expansion in GIPC1 is associated with oculopharyngodistal myopathy. Brain 144, 601-614.
|
Yang, K., Zeng, Y.H., Qiu, Y.S., Lin, F., Chen, H.Z., Jin, M., Chen, L., Zheng, F.Z., Ding, Y.L., Cao, C.Y., et al., 2022. Expanding the phenotype and genotype spectra of PLIN4-associated myopathy with rimmed ubiquitin-positive autophagic vacuolation. Acta Neuropathol. 143, 733-735.
|
Yao, X.P., Cheng, X., Wang, C., Zhao, M., Guo, X.X., Su, H.Z., Lai, L.L., Zou, X.H., Chen, X.J., Zhao, Y., et al., 2018. Biallelic mutations in MYORG cause autosomal recessive primary familial brain calcification. Neuron 98, 1116-1123.
|
Yu, J., Deng, J., Guo, X., Shan, J., Luan, X., Cao, L., Zhao, J., Yu, M., Zhang, W., Lv, H., et al., 2021. The GGC repeat expansion in NOTCH2NLC is associated with oculopharyngodistal myopathy type 3. Brain 144, 1819-1832.
|
Yu, J., Liufu, T., Zheng, Y., Xu, J., Meng, L., Zhang, W., Yuan, Y., Hong, D., Charlet-Berguerand, N., Wang, Z., et al., 2022a. CGG repeat expansion in NOTCH2NLC causes mitochondrial dysfunction and progressive neurodegeneration in Drosophila model. Proc. Natl. Acad. Sci. U. S. A. 119, e2208649119.
|
Yu, J., Shan, J., Yu, M., Di, L., Xie, Z., Zhang, W., Lv, H., Meng, L., Zheng, Y., Zhao, Y., et al., 2022b. The CGG repeat expansion in RILPL1 is associated with oculopharyngodistal myopathy type 4. Am. J. Hum. Genet. 109, 533-541.
|
Zeng, Y.H., Yang, K., Du, G.Q., Chen, Y.K., Cao, C.Y., Qiu, Y.S., He, J., Lv, H.D., Qu, Q.Q., Chen, J.N., et al., 2022. GGC repeat expansion of RILPL1 is associated with oculopharyngodistal myopathy. Ann. Neurol. 92, 512-526.
|
Zhong, S., Lian, Y., Luo, W., Luo, R., Wu, X., Ji, J., Ji, Y., Ding, J., Wang, X., 2021. Upstream open reading frame with NOTCH2NLC GGC expansion generates polyglycine aggregates and disrupts nucleocytoplasmic transport: implications for polyglycine diseases. Acta Neuropathol. 142, 1003-1023.
|
Zhou, Z.D., Jankovic, J., Ashizawa, T., Tan, E.K., 2022. Neurodegenerative diseases associated with non-coding CGG tandem repeat expansions. Nat. Rev. Neurol. 18, 145-157.
|