Haplotype-resolved and chromosome-level genome assembly of Colorado potato beetle

Ziqi Ye; Ruirui Lu; Chao Li; Doudou Yang; Zhuozhen Zeng; Weichao Lin; Jie Cheng; Zhongmin Yang; Li Wang; Yulin Gao; Sanwen Huang; Xingtan Zhang; Suhua Li

doi:10.1016/j.jgg.2023.04.005

Volume 50 Issue 7

Jul. 2023

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Article Navigation > Journal of Genetics and Genomics > 2023 > 50(7): 532-535

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Haplotype-resolved and chromosome-level genome assembly of Colorado potato beetle

doi: 10.1016/j.jgg.2023.04.005

1. Shenzhen Branch, Guangdong Laboratory of Lingnan Modern Agriculture, Key Laboratory of Synthetic Biology, Ministry of Agriculture and Rural Affairs, Agricultural Genomics Institute at Shenzhen, Genome Analysis Laboratory of the Ministry of Agriculture and Rural Affairs, Chinese Academy of Agricultural Sciences, Shenzhen, Guangdong 518000, China;
2. Key Laboratory of Prevention and Control of Invasive Alien Species in Agriculture&Forestry of the North-western Desert Oasis, Ministry of Agriculture and Rural Affairs, College of Agronomy, Xinjiang Agricultural University, Urumqi, Xinjiang Uygur Autonomous Region 830052, China;
3. Shenzhen Branch, Guangdong Laboratory of Lingnan Modern Agriculture, Key Laboratory of Synthetic Biology, Ministry of Agriculture and Rural Affairs, Agricultural Genomics Institute at Shenzhen, Genome Analysis Laboratory of the Ministry of Agriculture and Rural Affairs, Chinese Academy of Agricultural Sciences, Shenzhen, Guangdong 518000, China;
4. Shenzhen Branch, Guangdong Laboratory of Lingnan Modern Agriculture, Key Laboratory of Synthetic Biology, Ministry of Agriculture and Rural Affairs, Agricultural Genomics Institute at Shenzhen, Genome Analysis Laboratory of the Ministry of Agriculture and Rural Affairs, Chinese Academy of Agricultural Sciences, Shenzhen, Guangdong 518000, China;
5. School of Life Sciences, Henan University, Kaifeng, Henan 475004, China;
6. Shenzhen Research Institute of Henan University, Shenzhen, Guangdong 518000, China;
7. Shenzhen Branch, Guangdong Laboratory of Lingnan Modern Agriculture, Key Laboratory of Synthetic Biology, Ministry of Agriculture and Rural Affairs, Agricultural Genomics Institute at Shenzhen, Genome Analysis Laboratory of the Ministry of Agriculture and Rural Affairs, Chinese Academy of Agricultural Sciences, Shenzhen, Guangdong 518000, China;
8. College of Horticulture, Xinjiang Agricultural University, Urumuqi, Xinjiang Uygur Autonomous Region 830052, China;
9. Shenzhen Branch, Guangdong Laboratory of Lingnan Modern Agriculture, Key Laboratory of Synthetic Biology, Ministry of Agriculture and Rural Affairs, Agricultural Genomics Institute at Shenzhen, Genome Analysis Laboratory of the Ministry of Agriculture and Rural Affairs, Chinese Academy of Agricultural Sciences, Shenzhen, Guangdong 518000, China;
10. State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing 100193, China;
11. Shenzhen Branch, Guangdong Laboratory of Lingnan Modern Agriculture, Key Laboratory of Synthetic Biology, Ministry of Agriculture and Rural Affairs, Agricultural Genomics Institute at Shenzhen, Genome Analysis Laboratory of the Ministry of Agriculture and Rural Affairs, Chinese Academy of Agricultural Sciences, Shenzhen, Guangdong 518000, China;
12. Chinese Academy of Tropical Agricultural Sciences, Haikou, Hainan 571101, China;
13. Shenzhen Branch, Guangdong Laboratory of Lingnan Modern Agriculture, Key Laboratory of Synthetic Biology, Ministry of Agriculture and Rural Affairs, Agricultural Genomics Institute at Shenzhen, Genome Analysis Laboratory of the Ministry of Agriculture and Rural Affairs, Chinese Academy of Agricultural Sciences, Shenzhen, Guangdong 518000, China

Funds:

This work was financially supported by the National Key R&D Program of China (2022YFD1700200, 2021YFD1400200), Science Technology and Innovation Commission of Shenzhen Municipality of China (ZDSYS 20200811142605017), and Major Projects for Talent Development in Guangdong Province of China (2021QN02N756).

Received Date: 2023-01-05
Accepted Date: 2023-04-06
Rev Recd Date: 2023-03-16
Publish Date: 2023-07-28

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References(19)

References

[1]	Alyokhin, A., Baker, M., Mota-Sanchez, D., Dively, G., Grafius, E., 2008. Colorado potato beetle resistance to insecticides. Am. J. Potato Res. 85, 395-413.
[2]	Bozzolan, F., Siaussat, D., Maria, A., Durand, N., Pottier, M.A., Chertemps, T., Maibeche-Coisne, M., 2014. Antennal uridine diphosphate (UDP)-glycosyltransferases in a pest insect: diversity and putative function in odorant andxenobiotics clearance. Insect Mol. Biol. 23, 539-549.
[3]	Dong, Y., Wu, M., Zhang, Q., Fu, J., Loiacono, F.V., Yang, Y., Wang, Z., Li, S., Chang, L., Bock, R., et al., 2022. Control of a sap-sucking insect pest by plastid-mediated RNA interference. Mol. Plant 15, 1176-1191.
[4]	Hawthorne, D.J., 2001. AFLP-based genetic linkage map of the Colorado potato beetle Leptinotarsa decemlineata: sex chromosomes and a pyrethroid-resistance candidate gene. Genetics 158, 695-700.
[5]	Hsiao, T. H., Hsiao, C., 1983. Chromosomal analysis of leptinotarsa and labidomera species (Coleoptera: chrysomelidae). Genetica 60, 139-150.
[6]	Jain, R.G., Fletcher, S.J., Manzie, N., Robinson, K.E., Li, P., Lu, E., Brosnan, C.A., Xu, Z.P., Mitter, N., 2022. Foliar application of clay-delivered RNA interference for whitefly control. Native Plants 8, 535-548.
[7]	Kergoat, G.J., Silvain, J.F., Delobel, A., Tuda, M., Anton, K.W., 2007. Defining the limits of taxonomic conservatism in host-plant use for phytophagous insects: molecular systematics and evolution of host-plant associations in the seed-beetle genus Bruchus Linnaeus (Coleoptera: chrysomelidae: Bruchinae. Mol. Phylogenet. Evol. 43, 251-269.
[8]	Li, Y., Liu, Z., Liu, C., Shi, Z., Pang, L., Chen, C., Chen, Y., Pan, R., Zhou, W., Chen, X.X., et al., 2022. HGT is widespread in insects and contributes to male courtship in lepidopterans. Cell 185, 2975-2987 e2910.
[9]	Liu, N., Li, Y.C., Zhang, R., 2012. Invasion of Colorado potato beetle, Leptinotarsa decemlineata, in China: dispersal, occurrence, and economic impact. Entomol. Exp. Appl. 143, 207-217.
[10]	Meyer, J.M., Markov, G.V., Baskaran, P., Herrmann, M., Sommer, R.J., Rodelsperger, C., 2016. Draft genome of the scarab beetle oryctes borbonicus on La reunion island. Genome Biol. Evol. 8, 2093-2105.
[11]	Najafabadi, H.S., Mnaimneh, S., Schmitges, F.W., Garton, M., Lam, K.N., Yang, A., Albu, M., Weirauch, M.T., Radovani, E., Kim, P.M., et al., 2015. C2H2 zinc finger proteins greatly expand the human regulatory lexicon. Nat. Biotechnol. 33, 555-562.
[12]	Naqqash, M.N., Gokce, A., Aksoy, E., Bakhsh, A., 2020. Downregulation of imidacloprid resistant genes alters the biological parameters in Colorado potato beetle, Leptinotarsa decemlineata Say (chrysomelidae: Coleoptera). Chemosphere 240, 124857.
[13]	Qiao, L., Lan, C., Capriotti, L., Ah-Fong, A., Nino Sanchez, J., Hamby, R., Heller, J., Zhao, H., Glass, N.L., Judelson, H.S., et al., 2021. Spray-induced gene silencing for disease control is dependent on the efficiency of pathogen RNA uptake. Plant Biotechnol. J. 19, 1756-1768.
[14]	Schoville, S.D., Chen, Y.H., Andersson, M.N., Benoit, J.B., Bhandari, A., Bowsher, J.H., Brevik, K., Cappelle, K., Chen, M.M., Childers, A.K., et al., 2018. A model species for agricultural pest genomics: the genome of the Colorado potato beetle, Leptinotarsa decemlineata (Coleoptera: chrysomelidae). Sci. Rep. 8, 1931.
[15]	Stokstad, E., 2019. The new potato. Science 363, 574-577.
[16]	Sun, Y., Gong, Y., He, Q., Kuang, S., Gao, Q., Ding, W., He, H., Xue, J., Li, Y., Qiu, L., 2022. FAR knockout significantly inhibits Chilo suppressalis survival and transgene expression of double-stranded FAR in rice exhibits strong pest resistance. Plant Biotechnol. J. 20, 2272-2283.
[17]	Wang, C., Hawthorne, D., Qin, Y.J., Pan, Z.H., Zhu, S.F., 2017. Impact of climate and host availability on future distribution of Colorado potato beetle. Sci. Rep. 7, 4489.
[18]	Wang, H., Shi, Y., Wang, L., Liu, S., Wu, S., Yang, Y., Feyereisen, R., Wu, Y., 2018. CYP6AE gene cluster knockout in Helicoverpa armigera reveals role in detoxification of phytochemicals and insecticides. Nat. Commun. 9, 4820.
[19]	Zuo, Y., Shi, Y., Zhang, F., Guan, F., Zhang, J., Feyereisen, R., Fabrick, J.A., Yang, Y., Wu, Y., 2021. Genome mapping coupled with CRISPR gene editing reveals a P450 gene confers avermectin resistance in the beet armyworm. PLoS Genet. 17, e1009680.