5.9
CiteScore
5.9
Impact Factor
Volume 49 Issue 11
Nov.  2022
Turn off MathJax
Article Contents

Deciphering the regulatory code of histone modifications in plants

doi: 10.1016/j.jgg.2022.07.003
Funds:

This work was supported by the National Natural Science Foundation of China (31670321), the fund of Northwest A&

F University (Z111021404)

and the Talents Program of Shaanxi Province of China.

  • Received Date: 2022-05-30
  • Accepted Date: 2022-07-10
  • Rev Recd Date: 2022-07-08
  • Publish Date: 2022-07-16
  • loading
  • Benveniste D., Sonntag H.-J., Sanguinetti G., Sproul D., 2014. Transcription factor binding predicts histone modifications in human cell lines. Proc. Natl. Acad. Sci. U. S. A. 111, 13367-13372
    Deng X., Qiu Q., He K., Cao X., 2018. The seekers: how epigenetic modifying enzymes find their hidden genomic targets in Arabidopsis. Curr. Opin. Plant Biol. 45, 75-81
    Franco-Zorrilla J.M., Lopez-Vidriero I., Carrasco J.L., Godoy M., Vera P., Solano R., 2014. DNA-binding specificities of plant transcription factors and their potential to define target genes. Proc. Natl. Acad. Sci. U. S. A. 111, 2367-2372
    He, K., Cao, X., Deng, X., 2021. Histone methylation in epigenetic regulation and temperature responses. Curr. Opin. Plant Biol. 61, 102001
    Iwafuchi-Doi M., Donahue G., Kakumanu A., Watts Jason A., Mahony S., Pugh B.F., Lee D., Kaestner Klaus H., Zaret Kenneth S., 2016. The pioneer transcription factor FoxA maintains an accessible nucleosome configuration at enhancers for tissue-specific gene activation. Mol. Cell 62, 79-91
    Klemm S., Shipony Z., Greenleaf W., 2019. Chromatin accessibility and the regulatory epigenome. Nat. Rev. Genet. 20, 207-220
    Koch C.M., Andrews R.M., Flicek P., Dillon S.C., Karaoz U., Clelland G.K., Wilcox S., Beare D.M., Fowler J.C., Couttet P., et al., 2007. The landscape of histone modifications across 1% of the human genome in five human cell lines. Genome Res. 17, 691-707
    Lambert S.A., Jolma A., Campitelli L.F., Das P.K., Yin Y., Albu M., Chen X., Taipale J., Hughes T.R., Weirauch M.T., 2018. The human transcription factors. Cell 172, 650-665
    LeCun, Y., Bengio, Y., Hinton, G., 2015. Deep learning. Nature 521, 436-444
    Liu, C., Lu, F., Cui, X., Cao, X., 2010. Histone methylation in higher plants. Annu. Rev. Plant Biol. 61(1), 395-420
    Loidl P., 2004. A plant dialect of the histone language. Trends Plant Sci. 9, 84-90
    Lu, F., Cui, X., Zhang, S., Jenuwein, T., Cao, X., 2011. Arabidopsis REF6 is a histone H3 lysine 27 demethylase. Nat. Genet. 43, 715-719
    Ngo V., Chen Z., Zhang K., Whitaker J., Wang M., Wang W., 2019. Epigenomic analysis reveals DNA motifs regulating histone modifications in human and mouse. Proc. Natl. Acad. Sci. U. S. A. 116, 3668-3677
    O’Malley, Ronan C., Huang, S.-shan C., Song, L., Lewsey, Mathew G., Bartlett, A., Nery, Joseph R., Galli, M., Gallavotti, A., Ecker, Joseph R., 2016. Cistrome and epicistrome features shape the regulatory DNA landscape. Cell 165, 1280-1292
    Whitaker J.W., Chen Z., Wang W., 2015. Predicting the human epigenome from DNA motifs. Nat. Methods 12, 265-272
    Wu J., Ichihashi Y., Suzuki T., Shibata A., Shirasu K., Yamaguchi N., Ito T., 2019. Abscisic acid-dependent histone demethylation during postgermination growth arrest in Arabidopsis. Plant Cell Environ. 42, 2198-2214
    Zander M., Willige B., He Y., Nguyen T., Langford A., Nehring R., Howell E., McGrath R., Bartlett A., Castanon R., Nery J. et al., 2019. Epigenetic silencing of a multifunctional plant stress regulator. Elife 8, e47835
  • 加载中

Catalog

    通讯作者: 陈斌, bchen63@163.com
    • 1. 

      沈阳化工大学材料科学与工程学院 沈阳 110142

    1. 本站搜索
    2. 百度学术搜索
    3. 万方数据库搜索
    4. CNKI搜索

    Article Metrics

    Article views (478) PDF downloads (62) Cited by ()
    Proportional views
    Related

    /

    DownLoad:  Full-Size Img  PowerPoint
    Return
    Return