5.9
CiteScore
5.9
Impact Factor
Volume 49 Issue 10
Oct.  2022
Turn off MathJax
Article Contents

An efficient screening system to identify protein–protein or protein–DNA interaction partners of rice transcription factors

doi: 10.1016/j.jgg.2022.02.007
Funds:

We thank Jennifer Smith, PhD, from Liwen Bianji (Edanz) (www.liwenbianji.cn/ac), for editing the language of this manuscript. This work was supported by grants from the National Natural Science Foundation of China (31991204) and Chinese Academy of Sciences (XDA24010101).

  • Received Date: 2021-12-04
  • Accepted Date: 2022-02-06
  • Rev Recd Date: 2022-01-18
  • Publish Date: 2022-02-24
  • loading
  • Chen, W., Chen, Z., Luo, F., Liao, M., Wei, S., Yang, Z., Yang, J., 2019. RicetissueTFDB:a genome-wide identification of tissue-specific transcription factors in rice. Plant Genome 12, 1-11
    Chen, Z., Li, X., Lu, H., Gao, Q., Du, H., Peng, H., Qin, P.,Liang, C., 2020. Genomic atlases of introgression and differentiation reveal breeding footprints in Chinese cultivated rice. J. Genet. Genom. 47, 637-649
    Cui, R., Han, J., Zhao, S., Su, K., Wu, F., Du, X., Xu, Q., Chong, K., Theissen, G., Meng, Z., 2010. Functional conservation and diversification of class E floral homeotic genes in rice (Oryza sativa). Plant J. 61, 767-781
    Deplancke, B., Dupuy, D., Vidal, M., Walhout, A.J.M., 2004. A gateway-compatible yeast one-hybrid system. Genome Res. 14, 2093-2101
    Fields, S., Song, O.K., 1989. A novel genetic system to detect protein-protein interactions. Nature 340, 245-246
    Hu, Y., Liang, W., Yin, C., Yang, X., Ping, B., Li, A., Jia, R., Chen, M., Luo, Z., Cai, Q., et al., 2015. Interactions of OsMADS1 with floral homeotic genes in rice flower development. Mol. Plant 8, 1366-1384
    Jin, J., Tian, F., Yang, D.C., Meng, Y.Q., Kong, L., Luo, J., Gao, G., 2017. PlantTFDB 4.0:toward a central hub for transcription factors and regulatory interactions in plants. Nucleic Acids Res. 45, D1040-D1045
    Kikuchi, S., Satoh, K., Nagata, T., Kawagashira, N., Doi, K., Kishimoto, N., Yazaki, J., Ishikawa, M., Yamada, H., Ooka, H., et al., 2003. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica Rice. Science 301, 376-379
    Li, J.J., Herskowitz, I., 1993. Isolation of ORC6, a component of the yeast origin recognition complex by a one-hybrid system. Science 262, 1870-1874
    Lim, J., Moon, Y.H., An, G., Jang, S.K., 2000. Two rice MADS domain proteins interact with OsMADS1. Plant Mol. Biol. 44, 513-527
    Ortolan, F., Fonini, L.S., Pastori, T., Mariath, J.E.A., Saibo, N.J.M., Margis-Pinheiro, M., Lazzarotto, F., 2021. Tightly controlled expression of OsbHLH35 is critical for anther development in rice. Plant Sci. 302, 110716
    Ou, B., Yin, K.Q., Liu, S.N., Yang, Y., Gu, T., Wing Hui, J.M., Zhang, L., Miao, J., Kondou, Y., Matsui, M., et al., 2011. A high-throughput screening system for arabidopsis transcription factors and its application to Med25-dependent transcriptional regulation. Mol. Plant 4, 546-555
    Perez-Rodriguez, P., Riano-Pachon, D.M., Correa, L.G.G., Rensing, S.A., Kersten, B., Mueller-Roeber, B., 2009. PlnTFDB:updated content and new features of the plant transcription factor database. Nucleic Acids Res. 38, 822-827
    Priya, P., Jain, M., 2013. RiceSRTFDB:a database of rice transcription factors containing comprehensive expression, cis-regulatory element and mutant information to facilitate gene function analysis. Database 2013, bat027
    Rajagopala, S.V., 2015. Mapping the protein-protein interactome networks using yeast two-hybrid screens. Adv. Exp. Med. Biol. 883, 187-214
    Shen, C., Liu, H., Guan, Z., Yan, J., Zheng, T., Yan, W., Wu, C., Zhang, Q., Yin, P., Xing, Y., 2020. Structural insight into DNA recognition by CCT/NF-YB/YC complexes in plant photoperiodic flowering. Plant Cell 32, 3469-3484
    Walhout, A.J.M. and J.S. R.-H., 2012. Yeast one-hybrid assays:a historical and technical perspective. Methods 57, 441-447
    Yano, M., Katayose, Y., Ashikari, M., Yamanouchi, U., Monna, L., Fuse, T., Baba, T., Yamamoto, K., Umehara, Y., Nagamura, Y., Sasaki, T., 2000. Hd1, a major photoperiod sensitivity quantitative trait locus in rice, is closely related to the Arabidopsis flowering time gene CONSTANS. Plant Cell 12, 2473-2483
    Zong, W., Ren, D., Huang, M., Sun, K., Feng, J., Zhao, J., Xiao, D., Xie, W., Liu, S., Zhang, H., et al., 2020. Strong photoperiod sensitivity is controlled by cooperation and competition among Hd1, Ghd7 and DTH8 in rice heading. New Phytol. 229, 1635-1649
  • 加载中

Catalog

    通讯作者: 陈斌, bchen63@163.com
    • 1. 

      沈阳化工大学材料科学与工程学院 沈阳 110142

    1. 本站搜索
    2. 百度学术搜索
    3. 万方数据库搜索
    4. CNKI搜索

    Article Metrics

    Article views (492) PDF downloads (81) Cited by ()
    Proportional views
    Related

    /

    DownLoad:  Full-Size Img  PowerPoint
    Return
    Return