Transgenerational analysis of H3K4me3 and H3K27me3 by ChIP-Seq links epigenetic inheritance to metabolism

Ke An; Fengxia Du; Hao Meng; Guochao Li; Minjie Zhang; Zongzhi Liu; Zitong Zhao; Zilong Zhang; Di Yu; Dong Wang; Caiyun Yang; Wencui Ma; Lin Yuan; Meiting Zhou; Lili Duan; Li Jin; Hui Li; Yan Zhang; Jianzhong Su; Jie Qiao; Yingli Sun

doi:10.1016/j.jgg.2017.11.004

Volume 45 Issue 3

Mar. 2018

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Article Navigation > Journal of Genetics and Genomics > 2018 > 45(3): 169-172

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Transgenerational analysis of H3K4me3 and H3K27me3 by ChIP-Seq links epigenetic inheritance to metabolism

doi: 10.1016/j.jgg.2017.11.004

Ke An^{a, b, #},
Fengxia Du^{a, #},
Hao Meng^{a, b, #},
Guochao Li^{a, b},
Minjie Zhang^{a, b},
Zongzhi Liu^{a, b},
Zitong Zhao^{a, b},
Zilong Zhang^{a, b},
Di Yu^{a, b},
Dong Wang^{a, b},
Caiyun Yang^a,
Wencui Ma^c,
Lin Yuan^d,
Meiting Zhou^e,
Lili Duan^e,
Li Jin^f,
Hui Li^f,
Yan Zhang^g,
Jianzhong Su^h,
Jie Qiaoⁱ,
Yingli Sun^a

a
Key Laboratory of Genomic and Precision Medicine, China Gastrointestinal Cancer Research Center, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing 100101, China
b
University of Chinese Academy of Sciences, Beijing 100049, China
c
Heze Third People's Hospital, Heze 274000, China
d
Department of Nuclear Medicine, Fengxian Central Hospital, Shanghai 116044, China
e
Weihai Municipal Hospital, Weihai 264200, China
f
State Key Laboratory of Genetic Engineering and MOE Key Laboratory of Contemporary Anthropology, School of Life Sciences, Fudan University, Shanghai 200433, China
g
College of Bioinformatics Science and Technology, Harbin Medical University, Harbin 150081, China
h
College of Biomedical Engineering, Wenzhou Medical University, Wenzhou 325035, China
i
Reproductive Medical Center, Department of Obstetrics and Gynecology, Peking University Third Hospital, Key Laboratory of Assisted, Beijing 100191, China

More Information

Corresponding author: E-mail address: sujz@wibe.ac.cn (Jianzhong Su); E-mail address: jie.qiao@263.net (Jie Qiao); E-mail address: sunyl@big.ac.cn (Yingli Sun)
Received Date: 2017-07-11
Accepted Date: 2017-11-28
Rev Recd Date: 2017-11-16

Available Online: 2017-12-05

Publish Date: 2018-03-20

Abstract

These authors contributed equally to this work.

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References(19)

References

[1]	Fischle, W., Tseng, B.S., Dormann, H.L. et al. Regulation of HP1-chromatin binding by histone H3 methylation and phosphorylation Nature, 438 (2005),pp. 1116-1122
[2]	Gapp, K., Jawaid, A., Sarkies, P. et al. Implication of sperm RNAs in transgenerational inheritance of the effects of early trauma in mice Nat. Neurosci., 17 (2014),pp. 667-669
[3]	Halfmann, R., Lindquist, S. Epigenetics in the extreme prions and the inheritance of environmentally acquired traits Science, 330 (2010),pp. 629-632
[4]	Huypens, P., Sass, S., Wu, M. et al. Epigenetic germline inheritance of diet-induced obesity and insulin resistance Nat. Genet., 48 (2016),pp. 497-499
[5]	Jones, P.A., Baylin, S.B. The epigenomics of cancer Cell, 128 (2007),pp. 683-692
[6]	, McKnight, S.L. Influence of metabolism on epigenetics and disease Cell, 153 (2013),pp. 56-69
[7]	Liu, X., Wang, C., Liu, W. et al. Distinct features of H3K4me3 and H3K27me3 chromatin domains in pre-implantation embryos Nature, 537 (2016),pp. 558-562
[8]	McLean, C.Y., Bristor, D., Hiller, M. et al. Nat. Biotechnol., 28 (2010),pp. 495-501
[9]	Peter, C.J., Akbarian, S. Balancing histone methylation activities in psychiatric disorders Trends Mol. Med., 17 (2011),pp. 372-379
[10]	Radford, E.J., Ito, M., Shi, H. et al. In utero undernourishment perturbs the adult sperm methylome and intergenerational metabolism Science, 345 (2014),p. 1255903
[11]	Seligson, D.B., Horvath, S., Shi, T. et al. Global histone modification patterns predict risk of prostate cancer recurrence Nature, 435 (2005),pp. 1262-1266
[12]	Siklenka, K., Erkek, S., Godmann, M. et al. Disruption of histone methylation in developing sperm impairs offspring health transgenerationally Science, 350 (2015)
[13]	Uptain, S.M., Lindquist, S. Prions as protein-based genetic elements Annu. Rev. Microbiol., 56 (2002),pp. 703-741
[14]	Wang, C.C., Yan, S., Hou, Z. et al. Present Y chromosomes reveal the ancestry of Emperor CAO Cao of 1800 years ago J. Hum. Genet., 57 (2012),pp. 216-218
[15]	Wang, L., Zhang, J., Duan, J. et al. Programming and inheritance of parental DNA methylomes in mammals Cell, 157 (2014),pp. 979-991
[16]	Zhang, B.J., Zheng, H., Huang, B. et al. Allelic reprogramming of the histone modification H3K4me3 in early mammalian development Nature, 537 (2016),pp. 553-557
[17]	Zhang, M., Wang, C.C., Yang, C. et al. Epigenetic pattern on the human Y chromosome is evolutionarily conserved PLoS One, 11 (2016)
[18]	Zhang, Y., Reinberg, D. Transcription regulation by histone methylation: interplay between different covalent modifications of the core histone tails Genes Dev., 15 (2001),pp. 2343-2360
[19]	Zheng, H., Huang, B., Zhang, B. et al. Resetting epigenetic memory by reprogramming of histone modifications in mammals Mol. Cell, 63 (2016),pp. 1066-1079