VirusMap: A visualization database for the influenza A virus

Yubin Xie; Xiaotong Luo; Zhihao He; Yueyuan Zheng; Zhixiang Zuo; Qi Zhao; Yanyan Miao; Jian Ren

doi:10.1016/j.jgg.2017.04.002

Volume 44 Issue 5

May 2017

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Article Navigation > Journal of Genetics and Genomics > 2017 > 44(5): 281-284

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VirusMap: A visualization database for the influenza A virus

doi: 10.1016/j.jgg.2017.04.002

Yubin Xie^{1, 2, #},
Xiaotong Luo^{3, #},
Zhihao He^{3, #},
Yueyuan Zheng³,
Zhixiang Zuo⁴,
Qi Zhao⁴,
Yanyan Miao⁵,
Jian Ren^{6, 7, 8}

1
Sun Yat-sen University Cancer Center, State Key Laboratory of Oncology in South China, Collaborative Innovation Center for Cancer Medicine, Sun Yat-sen University, Guangzhou 510060, China
2
State Key Laboratory of Biocontrol, School of Life Sciences, Sun Yat-sen University, Guangzhou 510275, China
3
State Key Laboratory of Biocontrol, School of Life Sciences, Sun Yat-sen University, Guangzhou 510275, China
4
Sun Yat-sen University Cancer Center, State Key Laboratory of Oncology in South China, Collaborative Innovation Center for Cancer Medicine, Sun Yat-sen University, Guangzhou 510060, China
5
State Key Laboratory of Biocontrol, School of Life Sciences, Sun Yat-sen University, Guangzhou 510275, China
6
Sun Yat-sen University Cancer Center, State Key Laboratory of Oncology in South China, Collaborative Innovation Center for Cancer Medicine, Sun Yat-sen University, Guangzhou 510060, China
7
State Key Laboratory of Biocontrol, School of Life Sciences, Sun Yat-sen University, Guangzhou 510275, China
8
Collaborative Innovation Center of High Performance Computing, National University of Defense Technology, Changsha 410073, China

More Information

Corresponding author: E-mail address: zhaoqi@sysucc.org.cn (Qi Zhao); E-mail address: miaoyany@mail.sysu.edu.cn (Yanyan Miao); E-mail address: renjian.sysu@gmail.com (Jian Ren)
Received Date: 2016-12-31
Accepted Date: 2017-04-28
Rev Recd Date: 2017-04-21

Available Online: 2017-04-29

Publish Date: 2017-05-20

Abstract

These authors contributed equally to this work.

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References(16)

References

[1]	Bao, Y., Bolotov, P., Dernovoy, D. et al. The influenza virus resource at the national center for biotechnology information J. Virol., 82 (2008),pp. 596-601
[2]	Bogner, P., Capua, I., Lipman, D.J. et al. A global initiative on sharing avian flu data Nature, 442 (2006),p. 981
[3]	Bouvier, N.M., Palese, P. The biology of influenza viruses Vaccine, 26 (2008),pp. D49-D53
[4]	Camacho, C., Coulouris, G., Avagyan, V. et al. BLAST+: architecture and applications BMC Bioinformatics, 10 (2009),p. 421
[5]	Chang, S., Zhang, J., Liao, X. et al. Influenza Virus Database (IVDB): an integrated information resource and analysis platform for influenza virus research Nucleic Acids Res., 35 (2007),pp. D376-D380
[6]	Fauci, A.S. Race against time Nature, 435 (2005),pp. 423-424
[7]	Fraser, C., Donnelly, C.A., Cauchemez, S. et al. Pandemic potential of a strain of influenza A (H1N1): early findings Science, 324 (2009),pp. 1557-1561
[8]	Kandun, I.N., Wibisono, H., Sedyaningsih, E.R. et al. Three Indonesian clusters of H5N1 virus infection in 2005 N. Engl. J. Med., 355 (2006),pp. 2186-2194
[9]	Murray, C.J., Lopez, A.D., Chin, B. et al. Estimation of potential global pandemic influenza mortality on the basis of vital registry data from the 1918-20 pandemic: a quantitative analysis Lancet, 368 (2006),pp. 2211-2218
[10]	Peiris, J.S., Poon, L.L., Guan, Y. Emergence of a novel swine-origin influenza A virus (S-OIV) H1N1 virus in humans J. Clin. Virol., 45 (2009),pp. 169-173
[11]	Plotree, D., Plotgram, D. PHYLIP-phylogeny inference package (version 3.2) Cladistics, 5 (1989),pp. 163-166
[12]	Sievers, F., Wilm, A., Dineen, D. et al. Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega Mol. Syst. Biol., 7 (2011),p. 539
[13]	Smits, S.A., Ouverney, C.C. jsPhyloSVG: a javascript library for visualizing interactive and vector-based phylogenetic trees on the web PLoS One, 5 (2010),p. e12267
[14]	Squires, R.B., Noronha, J., Hunt, V. et al. Influenza research database: an integrated bioinformatics resource for influenza research and surveillance Influenza Other Respir. Viruses, 6 (2012),pp. 404-416
[15]	Zhou, J., Wang, D., Gao, R. et al. Biological features of novel avian influenza A (H7N9) virus Nature, 499 (2013),pp. 500-503
[16]	Zhu, H., Wang, D., Kelvin, D.J. et al. Infectivity, transmission, and pathology of human-isolated H7N9 influenza virus in ferrets and pigs Science, 341 (2013),pp. 183-186