5.9
CiteScore
5.9
Impact Factor
Volume 38 Issue 3
Mar.  2011
Turn off MathJax
Article Contents

Mitochondrial DNA evidence supports northeast Indian origin of the aboriginal Andamanese in the Late Paleolithic

doi: 10.1016/j.jgg.2011.02.005
More Information
  • Corresponding author: E-mail address: kongqp@yahoo.com.cn (Qing-Peng Kong); E-mail address: zhangyp1@263.net.cn (Ya-Ping Zhang)
  • Received Date: 2010-08-03
  • Accepted Date: 2010-11-09
  • Rev Recd Date: 2010-11-07
  • Available Online: 2011-03-11
  • Publish Date: 2011-03-20
  • In view of the geographically closest location to Andaman archipelago, Myanmar was suggested to be the origin place of aboriginal Andamanese. However, for lacking any genetic information from this region, which has prevented to resolve the dispute on whether the aboriginal Andamanese were originated from mainland India or Myanmar. To solve this question and better understand the origin of the aboriginal Andamanese, we screened for haplogroups M31 (from which Andaman-specific lineage M31a1 branched off) and M32 among 846 mitochondrial DNAs (mtDNAs) sampled across Myanmar. As a result, two Myanmar individuals belonging to haplogroup M31 were identified, and completely sequencing the entire mtDNA genomes of both samples testified that the two M31 individuals observed in Myanmar were probably attributed to the recent gene flow from northeast India populations. Since no root lineages of haplogroup M31 or M32 were observed in Myanmar, it is unlikely that Myanmar may serve as the source place of the aboriginal Andamanese. To get further insight into the origin of this unique population, the detailed phylogenetic and phylogeographic analyses were performed by including additional 7 new entire mtDNA genomes and 113 M31 mtDNAs pinpointed from South Asian populations, and the results suggested that Andaman-specific M31a1 could in fact trace its origin to northeast India. Time estimation results further indicated that the Andaman archipelago was likely settled by modern humans from northeast India via the land-bridge which connected the Andaman archipelago and Myanmar around the Last Glacial Maximum (LGM), a scenario in well agreement with the evidence from linguistic and palaeoclimate studies.
  • loading
  • [1]
    Andrews, R.M., Kubacka, I., Chinnery, P.F. et al. Reanalysis and revision of the Cambridge reference sequence for human mitochondrial DNA Nat. Genet., 23 (1999),p. 147
    [2]
    Bandelt, H.J., Macaulay, V., Richards, M. Median networks: speedy construction and greedy reduction, one simulation, and two case studies from human mtDNA Mol. Phylogenet. Evol., 16 (2000),pp. 8-28
    [3]
    Barik, S.S., Sahani, R., Prasad, B.V. et al. Detailed mtDNA genotypes permit a reassessment of the settlement and population structure of the Andaman Islands Am. J. Phys. Anthropol., 136 (2008),pp. 19-27
    [4]
    Black, M.L., Dufall, K., Wise, C. et al. Genetic ancestries in northwest Cambodia Ann. Hum. Biol., 33 (2006),pp. 620-627
    [5]
    Clark, P.U., Dyke, A.S., Shakun, J.D. et al. The last glacial maximum Science, 325 (2009),pp. 710-714
    [6]
    Endicott, P., Gilbert, M.T., Stringer, C. et al. The genetic origins of the Andaman islanders Am. J. Hum. Genet., 72 (2003),pp. 178-184
    [7]
    Endicott, P., Metspalu, M., Stringer, C. et al. Multiplexed SNP typing of ancient DNA clarifies the origin of Andaman mtDNA haplogroups amongst south Asian tribal populations PLoS ONE, 1 (2006),p. e81
    [8]
    Fornarino, S., Pala, M., Battaglia, V. et al. Mitochondrial and Y-chromosome diversity of the Tharus (Nepal): a reservoir of genetic variation BMC Evol. Biol., 9 (2009),p. 154
    [9]
    Forster, P., Harding, R., Torroni, A. et al. Origin and evolution of native American mtDNA variation: a reappraisal Am. J. Hum. Genet., 59 (1996),pp. 935-945
    [10]
    Gan, R.J., Pan, S.L., Mustavich, L. et al. Pinghua population as an exception of Han Chinese’s coherent genetic structure J. Hum. Genet., 53 (2008),pp. 303-313
    [11]
    Hill, C., Soares, P., Mormina, M. et al. A mitochondrial stratigraphy for island southeast Asia Am. J. Hum. Genet., 80 (2007),pp. 29-43
    [12]
    Hill, C., Soares, P., Mormina, M. et al. Phylogeography and ethnogenesis of aboriginal southeast Asians Mol. Biol. Evol., 23 (2006),pp. 2480-2491
    [13]
    Irwin, J.A., Saunier, J.L., Strouss, K.M. et al. Mitochondrial control region sequences from a Vietnamese population sample Int. J. Legal Med., 122 (2008),pp. 257-259
    [14]
    Kivisild, T., Shen, P., Wall, D.P. et al. The role of selection in the evolution of human mitochondrial genomes Genetics, 172 (2006),pp. 373-387
    [15]
    Kong, Q.P., Salas, A., Sun, C. et al. Distilling artificial recombinants from large sets of complete mtDNA genomes PLoS ONE, 3 (2008),p. e3016
    [16]
    Kong, Q.P., Yao, Y.G., Sun, C. et al. Phylogeny of east Asian mitochondrial DNA lineages inferred from complete sequences Am. J. Hum. Genet., 73 (2003),pp. 671-676
    [17]
    Lertrit, P., Poolsuwan, S., Thosarat, R. et al. Genetic history of southeast Asian populations as revealed by ancient and modern human mitochondrial DNA analysis Am. J. Phys. Anthropol., 137 (2008),pp. 425-440
    [18]
    Li, H., Cai, X., Winograd-Cort, E.R. et al. Mitochondrial DNA diversity and population differentiation in southern east Asia Am. J. Phys. Anthropol., 134 (2007),pp. 481-488
    [19]
    Mishmar, D., Ruiz-Pesini, E., Golik, P. et al. Natural selection shaped regional mtDNA variation in humans Proc. Natl. Acad. Sci. USA, 100 (2003),pp. 171-176
    [20]
    Palanichamy, M.G., Agrawal, S., Yao, Y.G. et al. Comment on “Reconstructing the origin of Andaman islanders” Science, 311 (2006),p. 470
    [21]
    Palanichamy, M.G., Sun, C., Agrawal, S. et al. Phylogeny of mitochondrial DNA macrohaplogroup N in India, based on complete sequencing: implications for the peopling of South Asia Am. J. Hum. Genet., 75 (2004),pp. 966-978
    [22]
    Peng, M.S., Quang, H.H., Dang, K.P. et al. Tracing the Austronesian footprint in mainland southeast Asia: a perspective from mitochondrial DNA Mol. Biol. Evol., 27 (2010),pp. 2417-2430
    [23]
    Perego, U.A., Achilli, A., Angerhofer, N. et al. Distinctive Paleo-Indian migration routes from Beringia marked by two rare mtDNA haplogroups Curr. Biol., 19 (2009),pp. 1-8
    [24]
    Qian, Y.P., Chu, Z.T., Dai, Q. et al. Mitochondrial DNA polymorphisms in Yunnan nationalities in China J. Hum. Genet., 46 (2001),pp. 211-220
    [25]
    Reddy, B.M., Langstieh, B.T., Kumar, V. et al. Austro-Asiatic tribes of northeast India provide hitherto missing genetic link between south and southeast Asia PLoS ONE, 2 (2007),p. e1141
    [26]
    Reich, D., Thangaraj, K., Patterson, N. et al. Reconstructing Indian population history Nature, 461 (2009),pp. 489-494
    [27]
    Saillard, J., Forster, P., Lynnerup, N. et al. mtDNA variation among Greenland eskimos: the edge of the Beringian expansion Am. J. Hum. Genet., 67 (2000),pp. 718-726
    [28]
    Soares, P., Ermini, L., Thomson, N. et al. Correcting for purifying selection: an improved human mitochondrial molecular clock Am. J. Hum. Genet., 84 (2009),pp. 740-759
    [29]
    Sun, C., Kong, Q.P., Palanichamy, M.G. et al. The dazzling array of basal branches in the mtDNA macrohaplogroup M from India as inferred from complete genomes Mol. Biol. Evol., 23 (2006),pp. 683-690
    [30]
    Tajima, A., Hayami, M., Tokunaga, K. et al. Genetic origins of the Ainu inferred from combined DNA analyses of maternal and paternal lineages J. Hum. Genet., 49 (2004),pp. 187-193
    [31]
    Thangaraj, K., Chaubey, G., Kivisild, T. et al. Reconstructing the origin of Andaman islanders Science, 308 (2005),p. 996
    [32]
    Thangaraj, K., Singh, L., Reddy, A.G. et al. Genetic affinities of the Andaman islanders, a vanishing human population Curr. Biol., 13 (2003),pp. 86-93
    [33]
    Thangaraj, K., Chaubey, G., Singh, V.K. et al. BMC Genomics, 7 (2006),p. 151
    [34]
    Voris, H.K. Maps of Pleistocene sea levels in southeast Asia: shorelines, river systems and time durations J. Biogeogr., 27 (2000),pp. 1153-1167
    [35]
    Wang, H.W., Jia, X., Ji, Y. et al. Strikingly different penetrance of LHON in two Chinese families with primary mutation G11778A is independent of mtDNA haplogroup background and secondary mutation G13708A Mutat. Res., 643 (2008),pp. 48-53
    [36]
    Wen, B., Xie, X., Gao, S. et al. Analyses of genetic structure of Tibeto-Burman populations reveals sex-biased admixture in southern Tibeto-Burmans Am. J. Hum. Genet., 74 (2004),pp. 856-865
    [37]
    Whitehouse, P., Usher, T., Ruhlen, M. et al. Kusunda: an Indo-Pacific language in Nepal Proc. Natl. Acad. Sci. USA, 101 (2004),pp. 5692-5695
    [38]
    Yao, Y.G., Kong, Q.P., Man, X.Y. et al. Reconstructing the evolutionary history of China: a caveat about inferences drawn from ancient DNA Mol. Biol. Evol., 20 (2003),pp. 214-219
    [39]
    Yao, Y.G., Nie, L., Harpending, H. et al. Genetic relationship of Chinese ethnic populations revealed by mtDNA sequence diversity Am. J. Phys. Anthropol., 118 (2002),pp. 63-76
    [40]
    Yao, Y.G., Zhang, Y.P. Phylogeographic analysis of mtDNA variation in four ethnic populations from Yunnan Province: new data and a reappraisal J. Hum. Genet., 47 (2002),pp. 311-318
    [41]
    Zhao, M., Kong, Q.P., Wang, H.W. et al. Mitochondrial genome evidence reveals successful Late Paleolithic settlement on the Tibetan plateau Proc. Natl. Acad. Sci. USA, 106 (2009),pp. 21230-21235
    [42]
    Zimmermann, B., Bodner, M., Amory, S. et al. Forensic and phylogeographic characterization of mtDNA lineages from northern Thailand (Chiang Mai) Int. J. Legal Med., 123 (2009),pp. 495-501
  • 加载中

Catalog

    通讯作者: 陈斌, bchen63@163.com
    • 1. 

      沈阳化工大学材料科学与工程学院 沈阳 110142

    1. 本站搜索
    2. 百度学术搜索
    3. 万方数据库搜索
    4. CNKI搜索

    Article Metrics

    Article views (165) PDF downloads (9) Cited by ()
    Proportional views
    Related

    /

    DownLoad:  Full-Size Img  PowerPoint
    Return
    Return