[1] |
Adams, K.L., Percifield, R., Wendel, J.F. Organ-specific silencing of duplicated genes in a newly synthesized cotton allotetraploid Genetics, 168 (2004),pp. 2217-2226
|
[2] |
Allshire, R.C., Karpen, G.H. Epigenetic regulation of centromeric chromatin: old dogs, new tricks? Nat. Rev. Genet., 9 (2008),pp. 923-937
|
[3] |
Black, B.E., Foltz, D.R., Chakravarthy, S. et al. Structural determinants for generating centromeric chromatin Nature, 430 (2004),pp. 578-582
|
[4] |
Bowers, J.E., Chapman, B.A., Rong, J.K. et al. Unravelling angiosperm genome evolution by phylogenetic analysis of chromosomal duplication events Nature, 422 (2003),pp. 433-438
|
[5] |
Chen, B.J., Ling, X.Y., Zhu, S.W. Journal of Anhui Agrotechnical Normal School, 10 (1996),pp. 27-28
|
[6] |
Chen, Z.J. Genetic and epigenetic mechanisms for gene expression and phenotypic variation in plant polyploids Annu. Rev. Plant Biol., 58 (2007),pp. 377-406
|
[7] |
Comai, L. Genetic and epigenetic interactions in allopolyploid plants Plant Mol. Biol., 43 (2000),pp. 387-399
|
[8] |
Cooper, J.L., Henikoff, S. Adaptive evolution of the histone fold domain in centromeric histones Mol. Biol. Evol., 21 (2004),pp. 1712-1718
|
[9] |
Flagel, L., Udall, J., Nettleton, D. et al. BMC Biol., 6 (2008),p. 16
|
[10] |
Gaut, B.S., Doebley, J.F. DNA sequence evidence for the segmental allotetraploid origin of maize Proc. Nat. Acad. Sci. USA, 94 (1997),pp. 6809-6814
|
[11] |
Ge, X.H., Wang, J., Li, Z.Y. Different genome-specific chromosome stabilities in synthetic Brassica allohexaploids revealed by wide crosses with Orychophragmus Ann. Bot., 104 (2009),pp. 19-31
|
[12] |
Guyot, R., Keller, B. Ancestral genome duplication in rice Genome, 47 (2004),pp. 610-614
|
[13] |
Han, Y.H., Wang, G., Liu, Z. et al. Divergence in centromere structure distinguishes related genomes in Coix lacryma-jobi and its wild relative Chromosoma, 119 (2010),pp. 89-98
|
[14] |
Henikoff, S., Ahmad, K., Malik, H.S. The centromere paradox: stable inheritance with rapidly evolving DNA Science, 293 (2001),pp. 1098-1102
|
[15] |
Hirsch, C.D., Wu, Y.F., Yan, H.H. et al. Mol. Biol. Evol., 26 (2009),pp. 2877-2885
|
[16] |
Hovav, R., Udall, J.A., Chaudhary, B. et al. Partitioned expression of duplicated genes during development and evolution of a single cell in a polyploid plant Proc. Nat. Acad. Sci. USA, 105 (2008),pp. 6191-6195
|
[17] |
Jiang, J.M., Gill, B.S., Wang, G.L. et al. Proc. Natl. Acad. Sci. USA, 92 (1995),pp. 4487-4491
|
[18] |
Jin, W.W., Melo, J.R., Nagaki, K. et al. Maize centromeres: Organization and functional adaptation in the genetic background of oat Plant Cell, 16 (2004),pp. 571-581
|
[19] |
Kawabe, A., Nasuda, S. Mol. Genet. Genomics, 272 (2005),pp. 593-602
|
[20] |
Lee, H.R., Zhang, W.L., Langdon, T. et al. Proc. Natl. Acad. Sci. USA, 102 (2005),pp. 11793-11798
|
[21] |
Leitch, A.R., Leitch, I.J. Genomic plasticity and the diversity of polyploidy plants Science, 320 (2008),pp. 481-483
|
[22] |
Malik, H.S., Henikoff, S. Genetics, 157 (2001),pp. 1293-1298
|
[23] |
Nagaki, K., Cheng, Z.K., Yang, S.O. et al. Sequencing of a rice centromere uncovers active genes Nat. Genet., 36 (2004),pp. 138-145
|
[24] |
Nagaki, K., Kashihara, K., Murata, M. A centromeric DNA sequence colocalized with a centromere-specific histone H3 in tobacco Chromosoma, 118 (2009),pp. 249-257
|
[25] |
Nagaki, K., Terada, K., Wakimoto, M. et al. Chromosome Res., 18 (2010),pp. 203-211
|
[26] |
Otto, S.P., Whitton, J. Polyploid incidence and evolution Annu. Rev. Genet., 34 (2000),pp. 401-437
|
[27] |
Pignatta, D., Comai, L. Parental squabbles and genome expression: lessons from the polyploids J. Biol., 8 (2009),p. 43
|
[28] |
Ravi, M., Chan, S.W.L. Haploid plants produced by centromere-mediated genome elimination Nature, 464 (2010),pp. 615-619
|
[29] |
Semon, M., Wolfe, K.H. Consequences of genome duplication Curr. Opin. Genet. Dev., 17 (2007),pp. 505-512
|
[30] |
Talbert, P.B., Masuelli, R., Tyagi, A.P. et al. Plant Cell, 14 (2002),pp. 1053-1066
|
[31] |
Tamura, K., Dudley, J., Nei, M. et al. MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0 Mol. Biol. Evol., 24 (2007),pp. 1596-1599
|
[32] |
Tan, G.X., Xiong, Z.Y., Jin, H.J. et al. J. Integr. Plant Biol., 48 (2006),pp. 1077-1083
|
[33] |
Thompson, J.D., Gibson, T.J., Higgins, D.G.
|
[34] |
Vermaak, D., Hayden, H.S., Henikoff, S. Centromere targeting element within the histone fold domain of Cid Mol. Cell Biol., 22 (2002),pp. 7553-7561
|
[35] |
Wang, G.X., Zhang, X.Y., Jin, W.W. An overview of plant centromere J. Genet. Genomics, 36 (2009),pp. 529-537
|
[36] |
Yi, C.D., Tang, S.Z., Zhou, Y. et al. Chin. Sci. Bull., 53 (2008),pp. 2973-2980
|
[37] |
Zhong, C.X., Marshall, J.B., Topp, C. et al. Centromeric retroelements and satellites interact with Maize kinetochore protein CENH3 Plant Cell, 14 (2002),pp. 2825-2836
|
[1] | Qiang Huang, Chaoliang Wen, Shuang Gu, Yuchen Jie, Guangqi Li, Yiyuan Yan, Chuanyao Tian, Guiqin Wu, Ning Yang. Synergy of gut microbiota and host genome in driving heterosis expression of chickens[J]. Journal of Genetics and Genomics, 2024, 51(10): 1121-1134. doi: 10.1016/j.jgg.2024.06.011 |
[2] | Li Li, Hongyi Meng, Jianmin Zhang, Yang Liu, Qingjian Zou, Yi Gao, Huaqiang Yang, Liangxue Lai. A tunable, rapid, and precise drug control of protein expression by combining transcriptional and post-translational regulation systems[J]. Journal of Genetics and Genomics, 2020, 47(11): 705-712. doi: 10.1016/j.jgg.2020.07.009 |
[3] | Zefang Tang, Tianxiang Chen, Xianwen Ren, Zemin Zhang. Identification of transcriptional isoforms associated with survival in cancer patient[J]. Journal of Genetics and Genomics, 2019, 46(9): 413-421. doi: 10.1016/j.jgg.2019.08.003 |
[4] | Chen Ai, Lei Kong. CGPS: A machine learning-based approach integrating multiple gene set analysis tools for better prioritization of biologically relevant pathways[J]. Journal of Genetics and Genomics, 2018, 45(9): 489-504. doi: 10.1016/j.jgg.2018.08.002 |
[5] | Ruoxi Yu, Dan Liu, Yin Yang, Yuanyuan Han, Lingru Li, Luyu Zheng, Ji Wang, Yan Zhang, Yingshuai Li, Qian-Fei Wang, Qi Wang. Expression profiling-based clustering of healthy subjects recapitulates classifications defined by clinical observation in Chinese medicine[J]. Journal of Genetics and Genomics, 2017, 44(4): 191-197. doi: 10.1016/j.jgg.2017.01.001 |
[6] | Wei Chen, Qilin Zhu, Haiyan Wang, Jin Xiao, Liping Xing, Peidu Chen, Weiwei Jin, Xiu-E. Wang. Competitive Expression of Endogenous Wheat CENH3 May Lead to Suppression of Alien ZmCENH3 in Transgenic Wheat × Maize Hybrids[J]. Journal of Genetics and Genomics, 2015, 42(11): 639-649. doi: 10.1016/j.jgg.2015.05.006 |
[7] | Yang Liu, Jun Fang, Fan Xu, Jinfang Chu, Cunyu Yan, Michael R. Schläppi, Youping Wang, Chengcai Chu. Expression Patterns of ABA and GA Metabolism Genes and Hormone Levels during Rice Seed Development and Imbibition: A Comparison of Dormant and Non-Dormant Rice Cultivars[J]. Journal of Genetics and Genomics, 2014, 41(6): 327-338. doi: 10.1016/j.jgg.2014.04.004 |
[8] | Jian Yan, Yan Jiao, Hong Chen, Feng Jiao, Karen A. Hasty, John M. Stuart, Weikuan Gu. Dual Effects of IL-1 Overactivity on the Immune System in a Mouse Model of Arthritis due to Deficiency of IL-1 Receptor Antagonist[J]. Journal of Genetics and Genomics, 2013, 40(2): 83-91. doi: 10.1016/j.jgg.2013.01.001 |
[9] | Li Yan, Zhang Liqing, Zhang Dexiang, Zhang Xiquan, Lu Xuemei. Faster evolution of Z-linked duplicate genes in chicken[J]. Journal of Genetics and Genomics, 2010, 37(10): 695-702. doi: 10.1016/S1673-8527(09)60087-4 |
[10] | Yeying Sun, Quanqi Zhang, Jie Qi, Yanjie Chen, Qiwang Zhong, Chunmei Li, Yan Yu, Shuo Li, Zhigang Wang. Identification of differential genes in the ovary relative to the testis and their expression patterns in half-smooth tongue sole (Cynoglossus semilaevis)[J]. Journal of Genetics and Genomics, 2010, 37(2): 137-145. doi: 10.1016/S1673-8527(09)60032-1 |
[11] | Su-Qiang Shao, Bing-Ying Li, Ze-Ting Zhang, Ying Zhou, Jia Jiang, Xue-Bao Li. Expression of a cotton MADS-box gene is regulated in anther development and in response to phytohormone signaling[J]. Journal of Genetics and Genomics, 2010, 37(12): 805-816. doi: 10.1016/S1673-8527(09)60098-9 |
[12] | Guixiang Wang, Xueyong Zhang, Weiwei Jin. An overview of plant centromeres[J]. Journal of Genetics and Genomics, 2009, 36(9): 529-537. doi: 10.1016/S1673-8527(08)60144-7 |
[13] | Sihua Peng, Xiaomin Zeng, Xiaobo Li, Xiaoning Peng, Liangbiao Chen. Multi-class cancer classification through gene expression profiles: microRNA versus mRNA[J]. Journal of Genetics and Genomics, 2009, 36(7): 409-416. doi: 10.1016/S1673-8527(08)60130-7 |
[14] | Jinhui Chen, Ying Tong, Shufang Zhao, Shanshan Ma, Chen Luo. vsx1 3′ untranlated region-mediated translation difference at differentdevelopmental stages of goldfish embryos[J]. Journal of Genetics and Genomics, 2009, 36(8): 483-490. doi: 10.1016/S1673-8527(08)60138-1 |
[15] | Rui Zhang, Bing Su. Small but influential: the role of microRNAs on gene regulatory network and 3′UTR evolution[J]. Journal of Genetics and Genomics, 2009, 36(1): 1-6. doi: 10.1016/S1673-8527(09)60001-1 |
[16] | Hao Yu, Jingfen Li, Li Li, Yuefen Song, Xiuqin Yang, Linlin Ding, Di Liu. In Silico Cloning, Expression and Phylogenetic Analysis of Pig GATA-3 Gene[J]. Journal of Genetics and Genomics, 2007, 34(11): 994-1000. doi: 10.1016/S1673-8527(07)60112-X |
[17] | Xiaoding Ma, Chaozhu Xing, Liping Guo, Yangcang Gong, Hailin Wang, Yunlei Zhao, Jianyong Wu. Analysis of Differentially Expressed Genes in Genic Male Sterility Cotton (Gossypium hirsutum L.) Using cDNA-AFLP[J]. Journal of Genetics and Genomics, 2007, 34(6): 536-543. doi: 10.1016/S1673-8527(07)60059-9 |
[18] | Baosong Xing, Yinxue Xu, Yong Cheng, Honglin Liu, Miao Du. Overexpression of IGF2R and IGF1R mRNA in SCNT-produced Goats Survived to Adulthood[J]. Journal of Genetics and Genomics, 2007, 34(8): 709-719. doi: 10.1016/S1673-8527(07)60080-0 |
[19] | Lu Yi, Zhenhua Hao, Tongtong Yang, Shaobing Wang, Baosong Xing, Yinxue Xu. cDNA Cloning, Bioinformatic and Tissue-specific Expression Analysis of Porcine JARID1C Gene[J]. Journal of Genetics and Genomics, 2007, 34(12): 1088-1096. doi: 10.1016/S1673-8527(07)60124-6 |
[20] | Haiyan Shi, Xiulan Wang, Dengdi Li, Wenkai Tang, Hong Wang, Wenliang Xu, Xuebao Li. Molecular Characterization of Cotton 14-3-3L Gene Preferentially Expressed During Fiber Elongation[J]. Journal of Genetics and Genomics, 2007, 34(2): 151-159. doi: 10.1016/S1673-8527(07)60016-2 |