Journal of Genetics and Genomics

Omics Tools

Edited by Zhiwei Cao, Xiu-Jie Wang, Shihua Zhang

Volume 45, Issue 7,

Pages 343-418 (20 July 2018)

Systematic identification and annotation of multiple-variant compound effects at transcription factor binding sites in human genome

Si-Jin Cheng, Shuai Jiang, Fang-Yuan Shi, Yang Ding, Ge Gao

2018, 45(7): 373 doi: 10.1016/j.jgg.2018.05.005

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Characterizing functional consequences of DNA copy number alterations in breast and ovarian tumors by spaceMap

Christopher J. Conley, Umut Ozbek, Pei Wang, Jie Peng

2018, 45(7): 361 doi: 10.1016/j.jgg.2018.07.003

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WocEA: The visualization of functional enrichment results in word clouds

Wanshan Ning, Shaofeng Lin, Jiaqi Zhou, Yaping Guo, Ying Zhang, Di Peng, Wankun Deng, Yu Xue

2018, 45(7): 415 doi: 10.1016/j.jgg.2018.02.008

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PhoPepMass: A database and search tool assisting human phosphorylation peptide identification from mass spectrometry data

Menghuan Zhang, Hui Cui, Lanming Chen, Ying Yu, Michael O. Glocker, Lu Xie

2018, 45(7): 381 doi: 10.1016/j.jgg.2018.07.005

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MCENet: A database for maize conditional co-expression network and network characterization collaborated with multi-dimensional omics levels

Tian Tian, Qi You, Hengyu Yan, Wenying Xu, Zhen Su

2018, 45(7): 351 doi: 10.1016/j.jgg.2018.05.007

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VCSRA: A fast and accurate multiple sequence alignment algorithm with a high degree of parallelism

Dong Dong, Wenhe Su, Wenqiang Shi, Quan Zou, Shaoliang Peng

2018, 45(7): 407 doi: 10.1016/j.jgg.2018.07.004

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LncPipe: A Nextflow-based pipeline for identification and analysis of long non-coding RNAs from RNA-Seq data

Qi Zhao, Yu Sun, Dawei Wang, Hongwan Zhang, Kai Yu, Jian Zheng, Zhixiang Zuo

2018, 45(7): 399 doi: 10.1016/j.jgg.2018.06.005

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Omics tools for the needle out of haystack?

Zhiwei Cao, Xiu-Jie Wang, Shihua Zhang

2018, 45(7): 343 doi: 10.1016/j.jgg.2018.07.007

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fGWAS: An R package for genome-wide association analysis with longitudinal phenotypes

Zhong Wang, Nating Wang, Rongling Wu, Zuoheng Wang

2018, 45(7): 411 doi: 10.1016/j.jgg.2018.06.006

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The DrugPattern tool for drug set enrichment analysis and its prediction for beneficial effects of oxLDL on type 2 diabetes

Chuanbo Huang, Weili Yang, Junpei Wang, Yuan Zhou, Bin Geng, Georgios Kararigas, Jichun Yang, Qinghua Cui

2018, 45(7): 389 doi: 10.1016/j.jgg.2018.07.002

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September 2023

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