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Volume 52 Issue 6
Jun.  2025
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Article Contents

Gap-free genome assembly and metabolomics analysis of common bean provide insights into genomic characteristics and metabolic determinants of seed coat pigmentation

doi: 10.1016/j.jgg.2025.03.002
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This work was supported by the National Natural Science Foundation of China (32241045, 32241046, 32241038), the Major Special Science and Technology Projects in Shanxi Province (202101140601027), Shanxi Provincial Agricultural Key Technologies Breakthrough Project (NYGG01), Doctoral Research Starting Project at Shanxi Agricultural University (2024BQ77), the National Key Research and Development Program of China (2023YFD1202705/2023YFD120270503, 2023YFD1202703/2023YFD1202703-4), and Shanxi Hou Ji Laboratory Self-proposed Research Project (202304010930003/202304010930003-03).

  • Received Date: 2025-03-03
  • Accepted Date: 2025-03-03
  • Available Online: 2025-07-11
  • Publish Date: 2025-03-08
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  • Cortinovis, G., Vincenzi, L., Anderson, R., Marturano, G., Marsh, J.I., Bayer, P.E., Rocchetti, L., Frascarelli, G., Lanzavecchia, G., Pieri, A., et al. 2024. Adaptive gene loss in the common bean pan-genome during range expansion and domestication. Nat. Commun. 15, 6698.
    Duenas, M., Martinez-Villaluenga, C., Limon, R.I., Penas, E. and Frias, J. 2015. Effect of germination and elicitation on phenolic composition and bioactivity of kidney beans. Food Res. Int. 70, 55-63.
    Garcia-Cordero, J., Martinez-Palma, N., Madrigal-Bujaidar, E., Jimenez-Martinez, C., Madrigal-Santillan, E., Morales-Gonzalez, J., Paniagua-Perez, R. and Alvarez-Gonzalez, I. 2021. Phaseolin, a protein from the seed of Phaseolus vulgaris, has antioxidant, antigenotoxic, and chemopreventive properties. Nutrients 13, 1750.
    Goodstein, D.M., Shu, S., Howson, R., Neupane, R., Hayes, R.D., Fazo, J., Mitros, T., Dirks, W., Hellsten, U., Putnam, N., et al. 2012. Phytozome: a comparative platform for green plant genomics. Nucleic Acids Res. 40, D1178-D1186.
    Kimothi, S. and Dhaliwal, Y. 2020. Nutritional and health promoting attribute of kidney beans (Phaseolus vulgaris L.): a review. Int. J. Curr. Microbiol. Appl. Sci. 9, 1201-1209.
    Lin, L.-Z., Harnly, J.M., Pastor-Corrales, M.S. and Luthria, D.L. 2008. The polyphenolic profiles of common bean (Phaseolus vulgaris L.). Food Chem. 107, 399-410.
    Nadeem, M.A., Yeken, M.Z., Shahid, M.Q., Habyarimana, E., Yilmaz, H., Alsaleh, A., Hatipoglu, R., Cilesiz, Y., Khawar, K.M., Ludidi, N., et al. 2021. Common bean as a potential crop for future food security: an overview of past, current and future contributions in genomics, transcriptomics, transgenics and proteomics. Biotechnol. Biotechnol. Equip. 35, 759-787.
    Schmutz, J., McClean, P.E., Mamidi, S., Wu, G.A., Cannon, S.B., Grimwood, J., Jenkins, J., Shu, S., Song, Q., Chavarro, C., et al. 2014. A reference genome for common bean and genome-wide analysis of dual domestications. Nat. Genet. 46, 707-713.
    Vlasova, A., Capella-Gutierrez, S., Rendon-Anaya, M., Hernandez-Onate, M., Minoche, A.E., Erb, I., Camara, F., Prieto-Barja, P., Corvelo, A., Sanseverino, W., et al. 2016. Genome and transcriptome analysis of the Mesoamerican common bean and the role of gene duplications in establishing tissue and temporal specialization of genes. Genome Biol. 17, 32.
    Wang, L., Zhang, M., Li, M., Jiang, X., Jiao, W., Song, Q., 2023. A telomere-to-telomere gap-free assembly of soybean genome. Mol. Plant 16, 1711-1714.
    Wang, J., Sun, P., Li, Y., Liu, Y., Yu, J., Ma, X., Sun, S., Yang, N., Xia, R., Lei, T., et al. 2017. Hierarchically aligning 10 legume genomes establishes a family-level genomics platform. Plant Physiol. 174, 284-300.
    Young, N.D., Debelle, F., Oldroyd, G.E.D., Geurts, R., Cannon, S.B., Udvardi, M.K., Benedito, V.A., Mayer, K.F.X., Gouzy, J., Schoof, H., et al. 2011. The medicago genome provides insight into the evolution of rhizobial symbioses. Nature 480, 520-524.
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