Legume symbiotic nitrogen fixation (SNF) is suppressed by inorganic nitrogen (N) in the soil. High N inhibition of nitrogenase activity is associated with the deprivation of carbon allocation and metabolism in nodules. However, the underlying molecular mechanisms remain unclear. Here, we identify GmCIN1, which encodes a cytosolic invertase, as a gateway for the N-tuning of sucrose utilization in nodules. GmCIN1 is enriched in mature soybean nodules, and its expression is regulated by nitrogen status. The knockout of GmCIN1 using genome editing partially mimics the inhibitory effects of N on nitrogenase activity and sugar content and the impact of high N on nodule transcriptomes. This indicates that GmCIN1 partially mediates the high N inhibition of nodule activity. Moreover, ChIP-qPCR and EMSA reveal that SNAP1/2 transcription factors directly bind to the GmCIN1 promoter. In addition, SNAP1/2 may be involved in the repression of GmCIN1 expression in mature nodules at high N concentrations. Our findings provide insights into the involvement of the transcriptional tuning of carbon (C) metabolism genes by N-signaling modulators in the N-induced inhibition of nitrogenase activity.
Bai, M., Yuan, J., Kuang, H., Gong, P., Li, S., Zhang, Z., Liu, B., Sun, J., Yang, M., Yang, L., et al., 2020 Generation of a multiplex mutagenesis population via pooled CRISPR-Cas9 in soya bean. Plant Biotechnol. J. 18, 721-731.
|
Bai, M., Yuan, C., Kuang, H., Sun, Q., Hu, X., Cui, L., Lin, W., Peng, C., Yue, P., Song, S., et al., 2022. Combination of two multiplex genome-edited soybean varieties enables customization of protein functional properties. Mol. Plant 15, 1081-1083.
|
Chen, W., Gong, P., Guo, J., Li, H., Li, R., Xing, W., Yang, Z., Guan, Y., 2018. Glycolysis regulates pollen tube polarity via Rho GTPase signaling. PLoS Genet. 14, e1007373.
|
Chen, L., Qin, L., Zhou, L., Li, X., Chen, Z., Sun, L., Wang, W., Lin, Z., Zhao, J., Yamaji, N., et al., 2019. A nodule-localized phosphate transporter GmPT7 plays an important role in enhancing symbiotic N2 fixation and yield in soybean. New Phytol. 221, 2013-2025.
|
Craig, J., Barratt, P., Tatge, H., Dejardin, A., Handley, L., Gardner, C.D., Barber, L., Wang, T., Hedley, C., Martin, C., et al., 1999. Mutations at the rug4 locus alter the carbon and nitrogen metabolism of pea plants through an effect on sucrose synthase. Plant J. 17, 353-362.
|
Ferguson, B.J., Mens, C., Hastwell, A.H., Zhang, M., Su, H., Jones, C.H., Chu, X., Gresshoff, P.M., 2019. Legume nodulation: the host controls the party. Plant Cell Environ. 42, 41-51.
|
Flemetakis, E., Efrose, R.C., Ott, T., Stedel, C., Aivalakis, G., Udvardi, M.K., Katinakis, P., 2006. Spatial and temporal organization of sucrose metabolism in Lotus japonicus nitrogen-fixing nodules suggests a role for the elusive alkaline/neutral invertase. Plant Mol. Biol. 62, 53-69.
|
Fujikake, H., Yamazaki, A., Ohtake, N., Sueyoshi, K., Matsuhashi, S., Ito, T., Mizuniwa, C., Kume, T., Hashimoto, S., Ishioka, N.S., et al., 2003. Quick and reversible inhibition of soybean root nodule growth by nitrate involves a decrease in sucrose supply to nodules. J. Exp. Bot. 54, 1379-1388.
|
Herrera, M.A., Bedmar, E.J., Olivares, J., 1987. Effects of nitrate and light intensity on photosynthesis and nitrogen fixation in alfalfa plants. J. Plant Physiol. 128, 467-472.
|
Herridge, D.F., Peoples, M.B., Boddey, R.M., 2008. Global inputs of biological nitrogen fixation in agricultural systems. Plant Soil 311, 1-18.
|
Horst, I., Welham, T., Kelly, S., Kaneko, T., Sato, S., Tabata, S., Parniske, M., Wang, T.L., 2007. TILLING mutants of Lotus japonicus reveal that nitrogen assimilation and fixation can occur in the absence of nodule-enhanced sucrose synthase. Plant Physiol. 144, 806-820.
|
Hua, B., Chang, J., Wu, M., Xu, Z., Zhang, F., Yang, M., Xu, H., Wang, L.J., Chen, X.Y., Wu, S., 2021. Mediation of JA signalling in glandular trichomes by the woolly/SlMYC1 regulatory module improves pest resistance in tomato. Plant Biotechnol. J. 19, 375-393.
|
Kaiser, B.N., Layzell, D.B., Shelp, B.J., 1997. Role of oxygen limitation and nitrate metabolism in the nitrate inhibition of nitrogen fixation by pea. Physiol. Plantarum 101, 45-50.
|
Li, S., Wu, C., Liu, H., Lyu, X., Xiao, F., Zhao, S., Ma, C., Yan, C., Liu, Z., Li, H., et al., 2023. Systemic regulation of nodule structure and assimilated carbon distribution by nitrate in soybean. Front. Plant Sci. 14, 1101074.
|
Lin, J.S., Li, X., Luo, Z., Mysore, K.S., Wen, J., Xie, F., 2018. NIN interacts with NLPs to mediate nitrate inhibition of nodulation in Medicago truncatula. Nat. Plants 4, 942-952.
|
Morell, M., Copeland, L., 1984. Enzymes of sucrose breakdown in soybean nodules. Plant Physiol. 74, 1030-1034.
|
Nishida, H., Suzaki, T., 2018. Nitrate-mediated control of root nodule symbiosis. Curr. Opin. Plant Biol. 44, 129-136.
|
Nishida, H., Tanaka, S., Handa, Y., Ito, M., Sakamoto, Y., Matsunaga, S., Betsuyaku, S., Miura, K., Soyano, T., Kawaguchi, M., et al., 2018. A NIN-LIKE PROTEIN mediates nitrate-induced control of root nodule symbiosis in Lotus japonicus. Nat. Commun. 9, 499-499.
|
Ohyama, T., Fujikake, H., Yashima, H., Tanabata, S., Ishikawa, S., Sato, T., Nishiwaki, T., Norikuni, O., Sueyoshi, K., Ishii, S., et al., 2011. Effect of nitrate on nodulation and nitrogen fixation of soybean, Soybean Physiology and Biochemistry. Rijeka, 2011, IntechOpen, Ch. 17. pp. 333-364.
|
Patil, G.B., Stupar, R.M., Zhang, F., 2022. Protoplast isolation, transfection, and gene editing for soybean (Glycine max). Methods Mol. Biol. 2464, 173-186.
|
Prell, J., Poole, P., 2006. Metabolic changes of rhizobia in legume nodules. Trends Microbiol. 14, 161-168.
|
Qiao, L., Lin, J., Suzaki, T., Liang, P., 2023. Staying hungry: a roadmap to harnessing central regulators of symbiotic nitrogen fixation under fluctuating nitrogen availability. aBIOTECH. 5, 107-113.
|
Ruan, Y.-L., 2014. Sucrose metabolism: gateway to diverse carbon use and sugar signaling. Annu. Rev. Plant Biol. 65, 33-67.
|
Sachs, J.L., Quides, K.W., Wendlandt, C.E., 2018. Legumes versus rhizobia: a model for ongoing conflict in symbiosis. New Phytol. 219, 1199-1206.
|
Saito, A., Tanabata, S., Tanabata, T., Tajima, S., Ueno, M., Ishikawa, S., Ohtake, N., Sueyoshi, K., Ohyama, T., 2014. Effect of nitrate on nodule and root growth of soybean (Glycine max (L.) Merr.). Int. J. Mol. Sci. 15, 4464-4480.
|
Streeter, J.G., 1980. Carbohydrates in soybean nodules: II. Distribution of compounds in seedlings during the onset of nitrogen fixation. Plant Physiol. 66, 471-476.
|
Streeter, J., Wong, P.P., 1988. Inhibition of legume nodule formation and N2 fixation by nitrate. Crit. Rev. Plant Sci. 7, 1-23.
|
Sturm, A., Tang, G.-Q., 1999. The sucrose-cleaving enzymes of plants are crucial for development, growth and carbon partitioning. Trends Plant Sci. 4, 401-407.
|
Tomlinson, K.L., McHugh, S., Labbe, H., Grainger, J.L., James, L.E., Pomeroy, K.M., Mullin, J.W., Miller, S.S., Dennis, D.T., Miki, B.L., 2004. Evidence that the hexose-to-sucrose ratio does not control the switch to storage product accumulation in oilseeds: analysis of tobacco seed development and effects of overexpressing apoplastic invertase. J. Exp. Bot. 55, 2291-2303.
|
Vessey, J.K., Waterer, J., 1992. In search of the mechanism of nitrate inhibition of nitrogenase activity in legume nodules: recent developments. Physiol. Plantarum 84, 171-176.
|
Vessey, J.K., Walsh, K.B., Layzell, D.B., 1988. Can a limitation in phloem supply to nodules account for the inhibitory effect of nitrate on nitrogenase activity in soybean? Physiol. Plantarum 74, 137-146.
|
Wang, Y., Xu, C., Sun, J., Dong, L., Li, M., Liu, Y., Wang, J., Zhang, X., Li, D., Sun, J., et al., 2021. GmRAV confers ecological adaptation through photoperiod control of flowering time and maturity in soybean. Plant Physiol. 187, 361-377.
|
Wang, X., Qiu, Z., Zhu, W., Wang, N., Bai, M., Kuang, H., Cai, C., Zhong, X., Kong, F., Lu, P., et al., 2023. The NAC transcription factors SNAP1/2/3/4 are central regulators mediating high nitrogen responses in mature nodules of soybean. Nat. Commun. 14, 4711.
|
Winter, H., Huber, S.C., 2000. Regulation of sucrose metabolism in higher plants: localization and regulation of activity of key enzymes. Crit. Rev. Biochem. 35, 253-289.
|
Xu, C., Shan, J., Liu, T., Wang, Q., Ji, Y., Zhang, Y., Wang, M., Xia, N., Zhao, L., 2023. CONSTANS-LIKE 1a positively regulates salt and drought tolerance in soybean. Plant Physiol. 191, 2427-2446.
|
Zhong, X., Wang, J., Shi, X., Bai, M., Yuan, C., Cai, C., Wang, N., Zhu, X., Kuang, H., Wang, X., et al., 2024. Genetically optimizing soybean nodulation improves yield and protein content. Nat. Plants 10, 736-742.
|