A haplotype-resolved genome reveals the genetic basis of spine formation in <i>Atelerix albiventris</i>

Libo Jiang; Jianing Xu; Mengyuan Zhu; Zhongfan Lv; Zemin Ning; Fengtang Yang

doi:10.1016/j.jgg.2024.06.012

Volume 51 Issue 12

Dec. 2024

Turn off MathJax

Article Contents

Article Navigation > Journal of Genetics and Genomics > 2024 > 51(12): 1529-1532

PDF( 1356 KB)

A haplotype-resolved genome reveals the genetic basis of spine formation in Atelerix albiventris

doi: 10.1016/j.jgg.2024.06.012

1. School of Life Sciences and Medicine, Shandong University of Technology, Zibo, Shandong 255000, China;
2. School of Computer Science and Technology, Shandong University of Technology, Zibo, Shandong 255000, China;
3. The Wellcome Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridge CB10 1SA, UK;
4. School of Life Sciences and Medicine, Shandong University of Technology, Zibo, Shandong 255000, China;
5. School of Life Sciences and Medicine, Shandong University of Technology, Zibo, Shandong 255000, China

Funds:

This work was supported by the National Natural Science Foundation of China (32370689 and 32070601) and the Natural Science Fund for Excellent Young Scholars of Shandong Province (ZR2022YQ23).

Received Date: 2024-04-21
Available Online: 2025-06-05
Publish Date: 2024-06-29

Abstract

FullText(HTML)

References(20)

References

Akbari, G., Babaei, M., Hassanzadeh, B., 2018. Morphological study of the European hedgehog (Erinaceus europaeus) tongue by SEM and LM. Anat. Sci. Int. 93, 207-217.

Arslan, A., Albayrak, I., Pamukoglu, N., Yorulmaz, T., Toyran, K., 2009. C-banded karyotype and NORs of the long-eared hedgehog, Hemiechinus auritus from Turkey. Folia Zool. 58, 9.

Becher, S. A., Griffiths, R., 1998. Genetic differentiation among local populations of the European hedgehog (Erinaceus europaeus) in mosaic habitats. Mol. Ecol. 7, 1599-1604.

Chen, N., Sun, J., Song, Y., Wei, X., Shi, Y., Zhang, L., 2017. A novel mutation of KRT9 gene in a Chinese Han pedigree with epidermolytic palmoplantar keratoderma. J. Cosmet. Dermatol. 16, 402-406.

Cui, Y., Song, Y., Geng, Q., Ding, Z., Qin, Y., Fan, R., Dong C., Geng, J., 2016. The expression of KRT2 and its effect on melanogenesis in alpaca skins. Acta Histochem. 118, 505-512.

Feng, J., Sun, Y., Li, H., Xiao, Y., Zhang, D., Smith, J. L., Ge J., Wang, T., 2021. Assessing mammal species richness and occupancy in a Northeast Asian temperate forest shared by cattle. Divers. Distrib. 27, 857-872.

Hernandez, A., 2008. Cherry removal by seed-dispersing mammals: mutualism through commensal association with frugivorous birds. Pol. J. Ecol. 56, 127.

Hotz, A., Oji, V., Bourrat, E., Jonca, N., Mazereeuw-Hautier, J., Betz, R. C., Blume-Peytavi, U., Stieler, K., Morice-Picard F., Schonbuchner, I., et al., 2016. Expanding the clinical and genetic spectrum of KRT1, KRT2, and KRT10 mutations in keratinopathic ichthyosis. Acta Derm.-Venereol. 96, 473-478.

Johnson, H., Reeve, N. J., Baker, P., Yarnell, R., Allen, S., Petrovan, S., 2015. Conservation strategy for West-European Hedgehog (Erinaceus europaeus) in the United Kingdom (2015-2025). People’s Trust for Endangered Species: London, UK, 2015.

Karatas, A., Mouradi Gharkheloo, M., Kankilic, T., 2007. Cranial features and karyotypes of two hedgehogs (Insectivora: Erinaceidae) from Iran. Anat., Histol., Embryol. 36, 419-423.

Kim, D., Hossain, M. Z., Nieves, A., Gu, L., Ratliff, T. S., Oh, S. M., Park, A., Han, S., Yang, N. B., Qi, J., et al., 2016. To control site-specific skin gene expression autocrine mimics paracrine canonical Wnt signaling and is activated ectopically in skin disease. Am. J. Pathol. 186, 1140-1150.

Kondoh, D., Tanaka, Y., Kawai, Y. K., Mineshige, T., Watanabe, K., Kobayashi, Y., 2021. Morphological and histological features of the vomeronasal organ in African pygmy hedgehog (Atelerix albiventris). Animals 11, 1462.

Kong, F., Wu, J., Guo, J., Wu, X., 2016. The research on taxonomic status of small-toothed forest hedgehogs (Mesechinus miodon). Genomics Appl. Biol. 35, 2040-2044.

Li, P., Qi, J., Zhong, Y., Ding, A., Xiao, H., 2023. Proteomic profiling reveals KRT6C as a probable hereterodimer partner for KRT9: New insights into re-classifying epidermolytic palmoplantar keratoderma (EPPK) and a milder form of pachyonychia congenita (PC-K6c) as a group of genetic cutaneous disorders. J. Proteomics 287, 104971.

Liu, X., Qiu, C., He, R., Zhang, Y., Zhao, Y., 2019. Keratin 9 L164P mutation in a Chinese pedigree with epidermolytic palmoplantar keratoderma: cytokeratin analysis and literature review. Mol. Genet. Genomic Med. 7, e977.

Mathews, F., Harrower, C., 2020. Regional Red List of British Mammals. The Mammal Society: Dorset, UK, 2020.

Santana, E. M., Jantz, H. E., Best, T. L., 2010. Atelerix albiventris (Erinaceomorpha: Erinaceidae). Mamm. Species 42, 99-110.

Taucher, A. L., Gloor, S., Dietrich, A., Geiger, M., Hegglin, D., Bontadina, F., 2020. Decline in distribution and abundance: urban hedgehogs under pressure. Animals 10, 1606.

Yang, F., Graphodatsky, A. S., Li, T., Fu, B., Dobigny, G., Wang, J., Perelman, P. L., Serdukova, N. A., Su, W., O'Brien, P. CM., et al., 2006. Comparative genome maps of the pangolin, hedgehog, sloth, anteater and human revealed by cross-species chromosome painting: further insight into the ancestral karyotype and genome evolution of eutherian mammals. Chromosome Res. 14, 283-296.

Zhang, Y., Lu, H. W., Ruan, J., 2023. GAEP: a comprehensive genome assembly evaluating pipeline. J. Genet. Genomics 50, 747-754.

Relative Articles

Supplements(0)

Cited By

Proportional views