Baker, J.M., Al-Nakkash, L., Herbst-Kralovetz, M.M., 2017. Estrogen gut microbiome axis: physiological and clinical implications. Maturitas 103, 45-53.
|
Barker, D.J.P., Osmond, C., 1986. Infant-mortality, childhood nutrition, and ischemic-heart-disease in england and wales. Lancet 1, 1077-1081.
|
Benjamin-Chung, J., Mertens, A., Colford, J.M., Jr., Hubbard, A.E., van der Laan, M.J., Coyle, J., Sofrygin, O., Cai, W., Nguyen, A., Pokpongkiat, N.N., et al., 2023. Early-childhood linear growth faltering in low- and middle-income countries. Nature 621, 550-557.
|
Berger, P.K., Plows, J.F., Jones, R.B., Alderete, T.L., Rios, C., Pickering, T.A., Fields, D.A., Bode, L., Peterson, B.S., Goran, M.I., 2020. Associations of maternal fructose and sugar-sweetened beverage and juice intake during lactation with infant neurodevelopmental outcomes at 24 months. Am. J. Clin. Nutr. 112, 1516-1522.
|
Carone, B.R., Fauquier, L., Habib, N., Shea, J.M., Hart, C.E., Li, R., Bock, C., Li, C., Gu, H., Zamore, P.D.,et al., 2010. Paternally induced transgenerational environmental reprogramming of metabolic gene expression in mammals. Cell 143, 1084-1096.
|
Chen, B., Du, Y.-R., Zhu, H., Sun, M.-L., Wang, C., Cheng, Y., Pang, H., Ding, G., Gao, J., Tan, Y., et al., 2022. Maternal inheritance of glucose intolerance via oocyte TET3 insufficiency. Nature 605, 761-776.
|
Chen, Q., Yan, M., Cao, Z., Li, X., Zhang, Y., Shi, J., Feng, G.-H., Peng, H., Zhang, X., Zhang, Y., et al., 2016. Sperm tsRNAs contribute to intergenerational inheritance of an acquired metabolic disorder. Science 351, 397-400.
|
Chen, T.T., Chen, X., Zhang, S.S., Zhu, J.W., Tang, B.X., Wang, A.K., Dong, L.L., Zhang, Z.W., Yu, C.X., Sun, Y.L., et al., 2021. The genome sequence archive family: toward explosive data growth and diverse data types. Genomics Proteomics & Bioinformatics 19, 578-583.
|
Cox, L.M., Yamanishi, S., Sohn, J., Alekseyenko, A.V., Leung, J.M., Cho, I., Kim, S.G., Li, H., Gao, Z., Mahana, D., et al., 2014. Altering the intestinal microbiota during a critical developmental window has lasting metabolic consequences. Cell 158, 705-721.
|
Daxinger, L., Whitelaw, E., 2012. Understanding transgenerational epigenetic inheritance via the gametes in mammals. Nat. Rev. Genet. 13, 153-162.
|
De-Regil, L.M., Fernandez-Gaxiola, A.C., Dowswell, T., Pena-Rosas, J.P., 2010. Effects and safety of periconceptional folate supplementation for preventing birth defects. Cochrane Database of Syst. Rev. 2015, CD007950.
|
de Waard, M., Brands, B., Kouwenhoven, S.M.P., Calvo Lerma, J., Crespo-Escobar, P., Koletzko, B., Zalewski, B.M., van Goudoever, J.B., 2017. Optimal nutrition in lactating women and its effect on later health of offspring: a systematic review of current evidence and recommendations (EarlyNutrition project). Crit. Rev. Food Sci. Nutr. 57, 4003-4016.
|
Elgart, M., Stern, S., Salton, O., Gnainsky, Y., Heifetz, Y., Soen, Y., 2016. Impact of gut microbiota on the fly's germ line. Nat. Commun. 7, 11280.
|
Fehr, K., Moossavi, S., Sbihi, H., Boutin, R.C.T., Bode, L., Robertson, B., Yonemitsu, C., Field, C.J., Becker, A.B., Mandhane, P.J., et al., 2020. Breastmilk feeding practices are associated with the co-occurrence of bacteria in mothers' milk and the infant gut: the child cohort study. Cell Host & Microbe 28, 285-297.
|
Fleming, T.P., 2018. The remarkable legacy of a father's diet on the health of his offspring. Proc. Natl. Acad. Sci. U. S. A. 115, 9827-9829.
|
Francis, E.C., Dabelea, D., Shankar, K., Perng, W., 2021. Maternal diet quality during pregnancy is associated with biomarkers of metabolic risk among male offspring. Diabetologia 64, 2478-2490.
|
Gahurova, L., Tomizawa, S.I., Smallwood, S.A., Stewart-Morgan, K.R., Saadeh, H., Kim, J., Andrews, S.R., Chen, T., Kelsey, G., 2017. Transcription and chromatin determinants of de novo DNA methylation timing in oocytes. Epigenetics & Chromatin 10. https://doi.org/10.1186/s13072-017-0133-5.
|
Ge, Z.J., Luo, S.M., Lin, F., Liang, Q.X., Huang, L., Wei, Y.C., Hou, Y., Han, Z.M., Schatten, H., Sun, Q.Y., 2014. DNA methylation in oocytes and liver of female mice and their offspring: effects of high-fat-diet-induced obesity. Environ. Health Perspect. 122, 159-164.
|
Gluckman, P.D., Hanson, M.A., Cooper, C., Thornburg, K.L., 2008. Effect of in utero and early-life conditions on adult health and disease. N. Engl. J. Med. 359, 61-73.
|
Gould, J.M., Smith, P.J., Airey, C.J., Mort, E.J., Airey, L.E., Warricker, F.D.M., Pearson-Farr, J.E., Weston, E.C., Gould, P.J.W., Semmence, O.G., et al., 2018. Mouse maternal protein restriction during preimplantation alone permanently alters brain neuron proportion and adult short-term memory. Proc. Natl. Acad. Sci. U. S. A. 115, E7398-E7407.
|
Granger, C.L., Embleton, N.D., Palmer, J.M., Lamb, C.A., Berrington, J.E., Stewart, C.J., 2021. Maternal breastmilk, infant gut microbiome and the impact on preterm infant health. Acta Paediatr. 110, 450-457.
|
Guo, H., Zhu, P., Guo, F., Li, X., Wu, X., Fan, X., Wen, L., Tang, F., 2015. Profiling DNA methylome landscapes of mammalian cells with single-cell reduced-representation bisulfite sequencing. Nat. Protoc. 10, 645-659.
|
Guo, Y., Qi, Y., Yang, X., Zhao, L., Wen, S., Liu, Y., Tang, L., 2016. Association between polycystic ovary syndrome and gut microbiota. PLoS ONE 11, e0153196.
|
Herzl, E., Schmitt, E.E., Shearrer, G., Keith, J.F., 2023. The effects of a western diet vs. a high-fiber unprocessed diet on health outcomes in mice offspring. Nutrients 15, 2858.
|
Iwamori, T., Lin, Y.-N., Ma, L., Iwamori, N., Matzuk, M.M., 2011. Identification and characterization of RBM44 as a novel intercellular bridge protein. PLoS ONE 6, e17066.
|
Jones, P.A., 2012. Functions of DNA methylation: islands, start sites, gene bodies and beyond. Nat. Rev. Genet. 13, 484-492.
|
Kinyoki, D.K., Osgood-Zimmerman, A.E., Pickering, B.V., Schaeffer, L.E., Marczak, L.B., Lazzar-Atwood, A., Collison, M.L., Henry, N.J., Abebe, Z., Adamu, A.A., et al., 2010. Downregulation of human DAB2IP gene expression in prostate cancer cells results in resistance to ionizing radiation. Cancer Res. 70, 2829-2839.
|
Kong, Z., Xie, D., Boike, T., Raghavan, P., Burma, S., Chen, D.J., Habib, A.A., Chakraborty, A., Hsieh, J.T., Saha, D., 2010. Downregulation of human DAB2IP gene expression in prostate cancer cells results in resistance to ionizing radiation. Cancer Res 70, 2829–2839.
|
Lismer, A., Dumeaux, V., Lafleur, C., Lambrot, R., Brind'Amour, J., Lorincz, M.C., Kimmins, S., 2021. Histone H3 lysine 4 trimethylation in sperm is transmitted to the embryo and associated with diet-induced phenotypes in the offspring. Dev. Cell 56, 671-686.
|
Love, M.I., Huber, W., Anders, S., 2014. Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2. Genome Bio. 15, 550.
|
Lowe, W.L., Jr., Scholtens, D.M., Kuang, A., Linder, B., Lawrence, J.M., Lebenthal, Y., McCance, D., Hamilton, J., Nodzenski, M., Talbot, O., et al., 2019. Hyperglycemia and adverse pregnancy outcome follow-up study (HAPO FUS): maternal gestational diabetes mellitus and childhood glucose metabolism. Diabetes Care 42, 372-380.
|
Lyons, K.E., Ryan, C.A., Dempsey, E.M., Ross, R.P., Stanton, C., 2020. Breast milk, a source of beneficial microbes and associated benefits for infant health. Nutrients 12, 1039.
|
Markle, J.G.M., Frank, D.N., Mortin-Toth, S., Robertson, C.E., Feazel, L.M., Rolle-Kampczyk, U., von Bergen, M., McCoy, K.D., Macpherson, A.J., Danska, J.S., 2013. Sex differences in the gut microbiome drive hormone-dependent regulation of autoimmunity. Science 339, 1084-1088.
|
Marshall, N.E., Abrams, B., Barbour, L.A., Catalano, P., Christian, P., Friedman, J.E., Hay, W.W., Jr., Hernandez, T.L., Krebs, N.F., Oken, E., et al., 2022. The importance of nutrition in pregnancy and lactation: lifelong consequences. Am. J. Obstet. Gynecol. 226, 607-632.
|
Painter, R.C., Roseboom, T.J., Bleker, O.P., 2005. Prenatal exposure to the Dutch famine and disease in later life: An overview. Reprod. Toxicol. 20, 345-352.
|
Patro, R., Duggal, G., Love, M.I., Irizarry, R.A., Kingsford, C., 2017. Salmon provides fast and bias-aware quantification of transcript expression. Nature Methods 14, 417-419.
|
Peters, J., 2014. The role of genomic imprinting in biology and disease: an expanding view. Nat. Rev. Genet. 15, 517-530.
|
Picelli, S., Bjorklund, A.K., Faridani, O.R., Sagasser, S., Winberg, G., Sandberg, R., 2013. Smart-seq2 for sensitive full-length transcriptome profiling in single cells. Nat. Methods 10, 1096-1098.
|
Radford, E.J., Ito, M., Shi, H., Corish, J.A., Yamazawa, K., Isganaitis, E., Seisenberger, S., Hore, T.A., Reik, W., Erkek, S., Peters, A.H.F.M., et al., 2014. In utero undernourishment perturbs the adult sperm methylome and intergenerational metabolism. Science 345, 1255903.
|
Rodgers, A.B., Morgan, C.P., Leu, N.A., Bale, T.L., 2015. Transgenerational epigenetic programming via sperm microRNA recapitulates effects of paternal stress. Proc. Natl. Acad. Sci. U. S. A. 112, 13699-13704.
|
Saben, J.L., Boudoures, A.L., Asghar, Z., Thompson, A., Drury, A., Zhang, W., Chi, M., Cusumano, A., Scheaffer, S., Moley, K.H., 2016. Maternal metabolic syndrome programs mitochondrial dysfunction via germline changes across three generations. Cell Rep. 16, 1-8.
|
Sales, V.M., Ferguson-Smith, A.C., Patti, M.E., 2017. Epigenetic mechanisms of transmission of metabolic disease across generations. Cell Metab. 25, 559-571.
|
Schwarzer, M., Gautam, U.K., Makki, K., Lambert, A., Brabec, T., Joly, A., Srutkova, D., Poinsot, P., Novotna, T., Geoffroy, S., et al., 2023. Microbe-mediated intestinal NOD2 stimulation improves linear growth of undernourished infant mice. Science 379, 826-833.
|
Skoracka, K., Ratajczak, A.E., Rychter, A.M., Dobrowolska, A., Krela-Kazmierczak, I., 2021. Female Fertility and the Nutritional Approach: The Most Essential Aspects. Adv. Nutr. 12, 2372-2386.
|
Smallwood, S.A., Kelsey, G., 2012. De novo DNA methylation: a germ cell perspective. Trends Genet. 28, 33-42.
|
Smith, Z.D., Meissner, A., 2013. DNA methylation: roles in mammalian development. Nat. Rev. Genet. 14, 204-220.
|
Stewart, K.R., Veselovska, L., Kelsey, G., 2016. Establishment and functions of DNA methylation in the germline. Epigenomics 8, 1399-1413.
|
Takahashi, Y., Valencia, M.M., Yu, Y., Ouchi, Y., Takahashi, K., Shokhirev, M.N., Lande, K., Williams, A.E., Fresia, C., Kurita, M., et al., 2023. Transgenerational inheritance of acquired epigenetic signatures at CpG islands in mice. Cell 186, 715-731.
|
Tang, S.-B., Zhang, T.-T., Yin, S., Shen, W., Luo, S.-M., Zhao, Y., Zhang, C.-L., Klinger, F.G., Sun, Q.-Y., Ge, Z.-J., 2023. Inheritance of perturbed methylation and metabolism caused by uterine malnutrition via oocytes. BMC Biol. 21, 43.
|
Tobi, E.W., Lumey, L.H., Talens, R.P., Kremer, D., Putter, H., Stein, A.D., Slagboom, P.E., Heijmans, B.T., 2009. DNA methylation differences after exposure to prenatal famine are common and timing- and sex-specific. Hum. Mol. Genet. 18, 4046-4053.
|
Watkins, A.J., Dias, I., Tsuro, H., Allen, D., Emes, R.D., Moreton, J., Wilson, R., Ingram, R.J.M., Sinclair, K.D., 2018. Paternal diet programs offspring health through sperm- and seminal plasma-specific pathways in mice. Proc. Natl. Acad. Sci. U. S. A. 115, 10064-10069.
|
Wei, Y., Yang, C.R., Wei, Y.P., Zhao, Z.A., Hou, Y., Schatten, H., Sun, Q.Y., 2014. Paternally induced transgenerational inheritance of susceptibility to diabetes in mammals. Proc. Natl. Acad. Sci. U. S. A. 111, 1873-1878.
|
Winship, A.L., Gazzard, S.E., Cullen-McEwen, L.A., Bertram, J.F., Hutt, K.J., 2018. Maternal low-protein diet programmes low ovarian reserve in offspring. Reproduction 156, 299-311.
|
Xu, B., Qin, W., Chen, Y., Tang, Y., Zhou, S., Huang, J., Ma, L., Yan, X., 2023. Multi-omics analysis reveals gut microbiota-ovary axis contributed to the follicular development difference between Meishan and Landrace x Yorkshire sows. J. Anim. Sci. Biotechnol. 14, 68.
|
Xue, Y.B., Bao, Y.M., Zhang, Z., Zhao, W.M., Xiao, J.F., He, S.M., Zhang, G.Q., Li, Y.X., Zhao, G.P., Chen, R.S., et al., 2022. Database resources of the national genomics data center, china national center for bioinformation in 2022. Nucleic Acids Res. 50, D27-D38.
|
Yelverton, C.A., Killeen, S.L., Feehily, C., Moore, R.L., Callaghan, S.L., Geraghty, A.A., Byrne, D.F., Walsh, C.J., Lawton, E.M., Murphy, E.F., et al., 2023. Maternal breastfeeding is associated with offspring microbiome diversity; a secondary analysis of the MicrobeMom randomized control trial. Front. Microbiol. 14, 1154114.
|
Yu, G., Wang, L.-G., Han, Y., He, Q.-Y., 2012. clusterProfiler: an R package for comparing biological themes among gene clusters. OMICS 16, 284-287.
|
Yuan, X., Tan, Y., Bajinka, O., Jammeh, M.L., Dukureh, A., Obiegbusi, C.N., Abdelhalim, K.A., Mohanad, M., 2024. The connection between epigenetics and gut microbiota-current perspective. Cell Biochem. Funct. 42, e3941.
|
Zambrano, E., Rodriguez-Gonzalez, G.L., Guzman, C., Garcia-Becerra, R., Boeck, L., Diaz, L., Menjivar, M., Larrea, F., Nathanielsz, P.W., 2005. A maternal low protein diet during pregnancy and lactation in the rat impairs male reproductive development. J. Physiol. 563, 275-284.
|
Zenk, F., Loeser, E., Schiavo, R., Kilpert, F., Bogdanovic, O., Iovino, N., 2017. Germ line-inherited H3K27me3 restricts enhancer function during maternal-to-zygotic transition. Science 357, 212-216.
|
Zhu, Y., Bond, J., Thomas, P., 2003. Identification, classification, and partial characterization of genes in humans and other vertebrates homologous to a fish membrane progestin receptor. Proc. Natl. Acad. Sci. U. S. A. 100, 2237-2242.
|
Zou, J., Ngo, V.L., Wang, Y., Wang, Y., Gewirtz, A.T., 2022. Maternal fiber deprivation alters microbiota in offspring, resulting in low-grade inflammation and predisposition to obesity. Cell Host Microbe 31, 45-57.
|