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Volume 50 Issue 4
Apr.  2023
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Article Contents

3D landscape reorganization in response to feeding preferences adaptation in the youngest split Gymnocypris fish

doi: 10.1016/j.jgg.2022.09.003
Funds:

http://www.yicas.cn) and the Young Top-notch Talent Cultivation Program of Hubei Province.

This work was supported by the National Natural Science Foundation of China (91731301, 32170480, 31972866, 31601858), the Strategic Priority Research Program of Chinese Academy of Sciences (XDB31000000), Chinese Academy of Sciences (Youth Innovation Promotion Association, Chinese Academy of Sciences

  • Received Date: 2022-09-19
  • Accepted Date: 2022-09-24
  • Publish Date: 2023-04-30
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  • [1]
    Bonev, B., Cohen, N.M., Szabo, Q., Fritsch, L., Papadopoulos, G.L., Lubling, Y., Xu, X.L., Lv, X.D., Hugnot, J.P., Tanay, A., et al., 2017. Multiscale 3D genome rewiring during mouse neural development. Cell 171, 557-572.
    [2]
    Cui, J., Chen, H., Tang, X., Zhao, J., Zhang, H., Chen, Y.Q., Chen, W., 2020. Δ6 fatty acid desaturases in polyunsaturated fatty acid biosynthesis: insights into the evolution, function with substrate specificities and biotechnological use. Appl. Microbiol. Biot. 104, 9947-9963.
    [3]
    Fortin, J.P., Hansen, K.D., 2015. Reconstructing A/B compartments as revealed by Hi-C using long-range correlations in epigenetic data. Genome Biol. 16, 1-23.
    [4]
    Gassaway, BM., Petersen, M.C., Surovtseva, Y.V., Barber, K.W., Sheetz, J.B., Aerni, H.R., Merkel, J.S., Samuel, V.T., Shulman, G.I., et al., 2018. PKCε contributes to lipid-induced insulin resistance through cross talk with p70S6K and through previously unknown regulators of insulin signaling. P. Natl. Acad. Sci. U. S. A. 115, E8996-E9005.
    [5]
    Guan, D., Xiong, Y., Borck, P.C., Jang, C., Doulias, P.T., Papazyan, R., Fang, B., Jiang, C.J., Zhang, Y.X., Briggs, E.R., et al., 2018. Diet-induced circadian enhancer remodeling synchronizes opposing hepatic lipid metabolic processes. Cell 174, 831-842.
    [6]
    Haasch, M.L., 2002. Effects of vehicle, diet and gender on the expression of PMP70-and CYP2K1/2M1-like proteins in the mummichog. Mar. Environ. Res. 54, 297-301.
    [7]
    He, M., Li, Y., Tang, Q., Li, D., Jin, L., Tian, S., Che, T.D., He, S., Deng, L.M., Gao, G.L., et al., 2018. Genome-wide chromatin structure changes during adipogenesis and myogenesis. Int. J. Biol. 14, 1571.
    [8]
    Khristi, V., Ratri, A., Ghosh, S., Pathak, D., Borosha, S., Dai, E., Roy, R., Chakravarthi, V.R., Wolfe, M.W., Rumi, M.A.K., et al., 2019. Disruption of ESR1 alters the expression of genes regulating hepatic lipid and carbohydrate metabolism in male rats. Mol. Cell. Endocrinol. 490, 47-56.
    [9]
    Kragesteen, B.K., Spielmann, M., Paliou, C., Heinrich, V., Schopflin, R., Esposito, A., Annunziatella, C., Bianco, S., Chiariello, A.M., Jerkovic, I., et al., 2018. Dynamic 3D chromatin architecture contributes to enhancer specificity and limb morphogenesis. Nat. Genet. 50, 1463-1473.
    [10]
    Lee, R.F., Hagen, W., Kattner, G., 2006. Lipid storage in marine zooplankton. Mar. Ecol. Prog. Ser. 307, 273-306.
    [11]
    Li, M., Huang, H., Wang, B., Jiang, S., Guo, H., Zhu, L., Wu, S.Q., Liu, J.F.,Wang, Li., Lan, X.H., et al., 2022. Comprehensive 3D epigenomic maps definelimbal stem/progenitor cell function and identity. Nat. Commun. 13, 1-16.
    [12]
    Liang, Z., Zhang, Q., Ji, C., Hu, G., Zhang, P., Wang, Y., Yang, L.W., et al., 2021. Reorganization of the 3D chromatin architecture of rice genomes during heat stress. BMC Biol. 19, 1-10.
    [13]
    Lupianez, D.G., Kraft, K., Heinrich, V., Krawitz, P., Brancati, F., Klopocki, E., Horn, D., Kayserili, H., Opitz, J.M., Laxova, R., et al., 2015. Disruptions of topological chromatin domains cause pathogenic rewiring of gene-enhancer interactions. Cell 161, 1012-1025.
    [14]
    Qin, Y., Grimm, S.A., Roberts, J.D., Chrysovergis, K., Wade, P.A., 2020. Alterations in promoter interaction landscape and transcriptional network underlying metabolic adaptation to diet. Nat. Commun. 11, 1-16.
    [15]
    Sexton, T., Cavalli, G., 2015. The role of chromosome domains in shaping the functional genome. Cell 160, 1049-1059.
    [16]
    Skolness, S.Y., Durhan, E.J., Jensen, K.M., Kahl, M.D., Makynen, E.A., Villeneuve, D.L., Ankley, G.T., 2012. Effects of gemfibrozil on lipid metabolism, steroidogenesis, and reproduction in the fathead minnow (Pimephales promelas). Environ. Toxicol. Chem. 31, 2615-2624.
    [17]
    Starkl, P., Marichal, T., Galli, S.J., 2013. PLA2G3 promotes mast cell maturation and function. Nat. Immunol. 14, 527-529.
    [18]
    Wang, L.X., Frey, M.R., Kohli, R., 2021. The Role of FGF19 and MALRD1 in Enterohepatic Bile Acid Signaling. Front. Endocrinol. 12, 799648.
    [19]
    Zhang, Q., Ma, X.F., Dong, M.Z., Tan, J., Zhang, J., Zhuang, L.K., Liu, S.S., Xin, Y.N., 2020. MiR-30b-5p regulates the lipid metabolism by targeting PPARGC1A in Huh-7 cell line. Lipids Health Dis. 19, 1-11.
    [20]
    Zhao, K., Duan, Z.Y., Peng, Z.G., Guo, S.C., Li, J.B., He, S.P., Zhao, X.Q., 2009. The youngest split in sympatric schizothoracine fish (Cyprinidae) is shaped by ecological adaptations in a Tibetan Plateau glacier lake. Mol Ecol, 18, 3616-3628.
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