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Volume 50 Issue 1
Jan.  2023
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Article Navigation >  Journal of Genetics and Genomics  > 2023  >  50(1): 7-19

Quantitative proteomics reveals key pathways in the symbiotic interface and the likely extracellular property of soybean symbiosome

doi: 10.1016/j.jgg.2022.04.004
  •  

    a. The State Key Laboratory for Molecular Developmental Biology, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, China;

  •  

    b. College of Advanced Agricultural Sciences, University of Chinese Academy of Sciences, Beijing 100049, China

Funds:

We thank Dr. Yingchun Wang for critical reading and comments of the manuscript, and the Proteomics Facility at the Institute of Genetics and Developmental Biology, Chinese Academy of Sciences for technical assistance. We thank the grant support to W.-C.Y. from the MOST (2016YFA0500502) and NSFC (31161130534), China. Y.L. from the Chinese Academy of Sciences (YSBR-011, ZDRW-ZS-2019-2, KFZD-SW-112-02-05).

  • Received Date: 2022-03-09
  • Accepted Date: 2022-04-13
  • Rev Recd Date: 2022-04-11
  • Publish Date: 2023-01-28
    Abstract
  • An effective symbiosis between legumes and rhizobia relies largely on diverse proteins at the plant-rhizobium interface for material transportation and signal transduction during symbiotic nitrogen fixation. Here, we report a comprehensive proteome atlas of the soybean symbiosome membrane (SM), peribacteroid space (PBS), and root microsomal fraction (RMF) using state-of-the-art label-free quantitative proteomic technology. In total, 1759 soybean proteins with diverse functions are detected in the SM, and 1476 soybean proteins and 369 rhizobial proteins are detected in the PBS. The diversity of SM proteins detected suggests multiple origins of the SM. Quantitative comparative analysis highlights amino acid metabolism and nutrient uptake in the SM, indicative of the key pathways in nitrogen assimilation. The detection of soybean secretory proteins in the PBS and receptor-like kinases in the SM provides evidence for the likely extracellular property of the symbiosome and the potential signaling communication between both symbionts at the symbiotic interface. Our proteomic data provide clues for how some of the sophisticated regulation between soybean and rhizobium at the symbiotic interface is achieved, and suggest approaches for symbiosis engineering.
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