Allele-specific expression and splicing provide insight into the phenotypic differences between thin- and fat-tailed sheep breeds

Fei Wang; Junjie Shao; Sangang He; Yingwei Guo; Xiangyu Pan; Yu Wang; Hojjat Asadollahpour Nanaei; Lei Chen; Ran Li; Han Xu; Zhirui Yang; Mingjun Liu; Yu Jiang

doi:10.1016/j.jgg.2021.12.008

Volume 49 Issue 6

Jun. 2022

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Article Navigation > Journal of Genetics and Genomics > 2022 > 49(6): 583-586

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Allele-specific expression and splicing provide insight into the phenotypic differences between thin- and fat-tailed sheep breeds

doi: 10.1016/j.jgg.2021.12.008

1. Key Laboratory of Animal Genetics, Breeding and Reproduction of Shaanxi Province, College of Animal Science and Technology, Northwest A&F University, Yangling, Shaanxi 712100, China;
2. Key Laboratory of Ruminant Genetics, Breeding & Reproduction, Ministry of Agriculture, China;
3. Key Laboratory of Animal Biotechnology of Xinjiang, Institute of Biotechnology, Xinjiang Academy of Animal Science, Urumqi, Xinjiang 830026, China;
4. Key Laboratory of Animal Genetics, Breeding and Reproduction of Shaanxi Province, College of Animal Science and Technology, Northwest A&F University, Yangling, Shaanxi 712100, China;
5. Key Laboratory of Ruminant Genetics, Breeding & Reproduction, Ministry of Agriculture, China;
6. Key Laboratory of Animal Biotechnology of Xinjiang, Institute of Biotechnology, Xinjiang Academy of Animal Science, Urumqi, Xinjiang 830026, China;
7. Key Laboratory of Animal Genetics, Breeding and Reproduction of Shaanxi Province, College of Animal Science and Technology, Northwest A&F University, Yangling, Shaanxi 712100, China;
8. Key Laboratory of Ruminant Genetics, Breeding & Reproduction, Ministry of Agriculture, China;
9. Key Laboratory of Animal Biotechnology of Xinjiang, Institute of Biotechnology, Xinjiang Academy of Animal Science, Urumqi, Xinjiang 830026, China;
10. Key Laboratory of Animal Genetics, Breeding and Reproduction of Shaanxi Province, College of Animal Science and Technology, Northwest A&F University, Yangling, Shaanxi 712100, China

Funds:

F University (Z1090220306).

F University (NWAFU) for providing bioinformatics analysis resources. This work was supported by the research grants from the National Natural Science Foundation of China (31822052), the National Thousand Youth Talents Plan, the Key Laboratory Research Grant of Xinjiang Province (2017D04028), Tianshan Innovation Team program (2018D14004), the startup fund from Northwest A&

We are grateful to the High-Performance Computing Center (HPC) of Northwest A&

Received Date: 2021-10-10
Accepted Date: 2021-12-11
Rev Recd Date: 2021-11-20
Publish Date: 2022-06-30

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References

Cao, Y.H., Xu, H., Li, R., Gao, S., Luo, J., Jiang, Y. 2019. Genetic basis of phenotypic differences between Chinese Yunling black goats and Nubian goats revealed by allele-specific expression in their F1 hybrids. Front Genet. 10, 145

Chessa, B., Pereira, F., Arnaud, F., Amorim, A., Goyache, F., Mainland, I., Kao, R.R., Pemberton, J.M., Beraldi, D., Stear, M.J., et al., 2009. Revealing the history of sheep domestication using retrovirus integrations. Science 324, 532-536

Demars, J., Cano, M., Drouilhet, L., Plisson-Petit, F., Bardou, P., Fabre, S., Servin, B., Sarry, J., Woloszyn, F., Mulsant, P., et al., 2017. Genome-wide identification of the mutation underlying fleece variation and discriminating ancestral hairy species from modern woolly sheep. Mol. Biol. Evol. 34, 1722-1729

Dong, K.Z., Yang, M., Han, J.G., Ma, Q., Han, J.L., Song, Z.Y., Luosang, C.C., Gorkhali, N.A., Yang, B.H., He, X.H., et al., 2020. Genomic analysis of worldwide sheep breeds reveals pdgfd as a major target of fat-tail selection in sheep. BMC Genomics 21, 800

Fang, J., Li, T.Y., Zhu, X.H., Deng, K.Q., Ji, Y.X., Fang, C., Zhang, X.J., Guo, J.H., Zhang, P., Li, H.L., et al., 2017. Control of pathological cardiac hypertrophy by transcriptional corepressor IRF2BP2(interferon regulatory factor-2 binding protein 2). Hypertension 70, 515

Farahani AH, S.H., Shahrbabak MM, Yeganeh MH., 2010. Relationship of fat-tail and body measurements with some economic important traits in fat-tail makoei breed of iranian sheep. Afr. J. Biotechnol. 9, 5989-5992

Kawano, Y., Kypta, R., 2003. Secreted antagonists of the wnt signalling pathway. J. Cell Sci. 116, 2627-2634

Li, X., Yang, J., Shen, M., Xie, X.-L., Liu, G.-J., Xu, Y.-X., Lv, F.-H., Yang, H., Yang, Y.-L., Liu, C.-B., et al., 2020. Whole-genome resequencing of wild and domestic sheep identifies genes associated with morphological and agronomic traits. Nat. Commun. 11, 2815

Nakae, J., Cao, Y., Oki, M., Orba, Y., Sawa, H., Kiyonari, H., Iskandar, K., Suga, K., Lombes, M.,Hayashi, Y., 2008. Forkhead transcription factor foxo1 in adipose tissue regulates energy storage and expenditure. Diabetes 57, 563-576

Salavati, M., Bush, S., Palma-Vera, S., McCulloch, M.E.B., Hume, D.A., Clark, E.L., 2019. Elimination of reference mapping bias reveals robust immune related allele-specifc expression in crossbred sheep. Front Genet 10, 863

Wang, Y., Gao, S., Zhao, Y., Chen, W.H., Shao, J.J., Wang, N.N., Li, M., Zhou, G.X., Wang, L., Shen, W.J., et al., 2019. Allele-specific expression and alternative splicing in horsexdonkey and cattlexyak hybrids. Zool. Res. 40, 293-304

Wang, Z., Li, Q., Chamba, Y., Zhang, B., Shang, P., Zhang, H.,Wu, C., 2015. Identification of genes related to growth and lipid deposition from transcriptome profiles of pig muscle tissue. PLoS One 10, e0141138

Wepy, J.A., Galligan, J.J., Kingsley, P.J., Xu, S., Goodman, M.C., Tallman, K.A., Rouzer, C.A., Marnett, L.J., 2019. Lysophospholipases cooperate to mediate lipid homeostasis and lysophospholipid signaling. J. Lipid Res. 60, 360-374

Yousef, A.R., Kohram, H., Shahneh, A.Z., Nik-Khah, A., Campbell, A.W., 2012. Comparison of the meat quality and fatty acid composition of traditional fat-tailed (Chall) and tailed (Zel) iranian sheep breeds. Meat Sci. 92, 417-422

Zhang, X.M., Cai, S.F., Chen, L.X., Yuan, R.Q., Nie, Y.P., Ding, S.Y., Fang, Y., Zhu, Q., Chen, K.R., Wei, H., et al., 2019. Integrated mirna-mrna transcriptomic analysis reveals epigenetic-mediated embryonic muscle growth differences between wuzhishan and landrace pigs. J. Anim. Sci 97, 1967-1978

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