Chen, N., Zhou, M., Dong, X., Qu, J., Gong, F., Han, Y., Qiu, Y., Wang, J., Liu, Y., Wei, Y., 2020. Epidemiological and clinical characteristics of 99 cases of 2019 novel coronavirus pneumonia in Wuhan, China: a descriptive study. Lancet 395, 507-513.
|
Chiara, M., D'Erchia, A.M., Gissi, C., Manzari, C., Parisi, A., Resta, N., Zambelli, F., Picardi, E., Pavesi, G., Horner, D.S., 2021. Next generation sequencing of SARS-CoV-2 genomes: challenges, applications and opportunities. Brief Bioinf. 22, 616-630.
|
Cuadrado-Payán, E., Montagud-Marrahi, E., Torres-Elorza, M., Bodro, M., Blasco, M., Poch, E., Soriano, A., Piñeiro, G.J., 2020. SARS-CoV-2 and influenza virus co-infection. Lancet 395, e84.
|
Di, L., Fu, Y., Sun, Y., Li, J., Liu, L., Yao, J., Wang, G., Wu, Y., Lao, K., Lee, R.W., 2020. RNA sequencing by direct tagmentation of RNA/DNA hybrids. Proc. Natl. Acad. Sci. U. S. A. 117, 2886-2893.
|
Hashemi, S.A., Safamanesh, S., Ghasemzadeh-Moghaddam, H., Ghafouri, M., Azimian, A., 2021. High prevalence of SARS-CoV-2 and influenza A virus (H1N1) coinfection in dead patients in Northeastern Iran. J. Med. Virol. 93, 1008-1012.
|
Kim, D., Quinn, J., Pinsky, B., Shah, N.H., Brown, I., 2020. Rates of Co-infection between SARS-CoV-2 and other respiratory pathogens. JAMA 323, 2085-2086.
|
Lansbury, L., Lim, B., Baskaran, V., Lim, W.S., 2020. Co-infections in people with COVID-19: a systematic review and meta-analysis. J. Infect. 81, 266-275.
|
Li, F., Kaczor-Urbanowicz, K.E., Sun, J., Majem, B., Lo, H.C., Kim, Y., Koyano, K., Rao, S.L., Kang, S.Y., Kim, S.M., 2018. Characterization of human salivary extracellular RNA by next-generation sequencing. Clin. Chem. 64, 1085-1095.
|
Lu, B., Dong, L., Yi, D., Zhang, M., Zhu, C., Li, X., Yi, C., 2020. Transposase-assisted tagmentation of RNA/DNA hybrid duplexes. Elife 9, e54919.
|
Majorek, K.A., Dunin-Horkawicz, S., Steczkiewicz, K., Muszewska, A., Nowotny, M., Ginalski, K., Bujnicki, J.M., 2014. The RNase H-like superfamily: new members, comparative structural analysis and evolutionary classification. Nucleic Acids Res. 42, 4160-4179.
|
Soler Rich, R., Rius Tarruella, J., Melgosa Camarero, M.T., 2020. Expanded mesenchymal stem cells: a novel therapeutic approach for SARS-CoV-2 pneumonia (COVID-19). Concepts regarding a first case in Spain. Med. Clin. (Engl Ed) 155, 318-319.
|
Verma, D., Church, T.M., Swaminathan, S., 2021. Epstein-barr virus lytic replication induces ACE2 expression and enhances SARS-CoV-2 pseudotyped virus entry in epithelial cells. J. Virol. 95, e0019221.
|
Wylie, T.N., Wylie, K.M., Herter, B.N., Storch, G.A., 2015. Enhanced virome sequencing using targeted sequence capture. Genome Res. 25, 1910-1920.
|
Xiao, M., Liu, X., Ji, J., Li, M., Li, J., Yang, L., Sun, W., Ren, P., Yang, G., Zhao, J., 2020. Multiple approaches for massively parallel sequencing of SARS-CoV-2 genomes directly from clinical samples. Genome Med. 12, 57.
|
Xu, Y., Kang, L., Shen, Z., Li, X., Wu, W., Ma, W., Fang, C., Yang, F., Jiang, X., Gong, S., 2020. Dynamics of severe acute respiratory syndrome coronavirus 2 genome variants in the feces during convalescence. J. Genet. Genom. 47, 610-617.
|
Youngs, J., Wyncoll, D., Hopkins, P., Arnold, A., Ball, J., Bicanic, T., 2020. Improving antibiotic stewardship in COVID-19: bacterial co-infection is less common than with influenza. J. Infect. 81, e55-e57.
|
Zhou, F., Yu, T., Du, R., Fan, G., Liu, Y., Liu, Z., Xiang, J., Wang, Y., Song, B., Gu, X., 2020. Clinical course and risk factors for mortality of adult inpatients with COVID-19 in Wuhan, China: a retrospective cohort study. Lancet 395, 1054-1062.
|
Zhou, X., Wang, H., Ji, Q., Du, M., Liang, Y., Li, H., Li, F., Shang, H., Zhu, X., Wang, W., 2021. Molecular deconvolution of the neutralizing antibodies induced by an inactivated SARS-CoV-2 virus vaccine. Protein Cell 10.1007/s13238-021-00840-z.
|