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Volume 47 Issue 12
Dec.  2020
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Phenotypic similarities in pigs with SOX10c.321dupC and SOX10c.325A>T mutations implied the correlation of SOX10 haploinsufficiency with Waardenburg syndrome

doi: 10.1016/j.jgg.2020.12.003
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  • SOX10 is a causative gene of Waardenburg syndrome (WS) that is a rare genetic disorder characterized by hearing loss and pigment disturbance. More than 100 mutations of SOX10 have been found in patients with Type 2 WS (WS2), Type 4 WS (WS4), and more complex syndromes. However, no mutation hotspot has been detected in SOX10, and most cases are sporadic, making it difficult to establish a correlation between the high phenotypic and genetic variability. In this study, a duplication of the 321th cytosine (c.321dupC) was introduced into SOX10 in pigs, which induced premature termination of the translation of SOX10 (p.K108QfsX45). The premature stop codon in Exon 3 triggered the degradation of mutant mRNA through nonsense-mediated mRNA decay. However, SOX10 induced a highly similar phenotype of WS2 with heterogeneous inner ear malformation compared with its adjacent missense mutation SOX10. In addition, a site-saturation mutation analysis of the SOX10 N-terminal nuclear localization signal (n-NLS), where these two mutations located, revealed the correlation between SOX10 haploinsufficiency and WS by an in vitro reporter assay. The analysis combining the in vitro assay with clinical cases may provide a clue to clinical diagnoses.
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  • [1]
    Argentaro, A., Sim, H., Kelly, S., Preiss, S., Clayton, A., Jans, D.A., Harley, V.R., 2003. A SOX9 defect of calmodulin-dependent nuclear import in campomelic dysplasia/autosomal sex reversal. J. Biol. Chem. 278, 33839-33847.
    [2]
    Bogdanova-Mihaylova, P., Alexander, M.D., Murphy, R.P.J., Murphy, S.M., 2017 Sep. Waardenburg syndrome: a rare cause of inherited neuropathy due to SOX10 mutation. J. Peripher. Nerv. Syst. 22 (3), 219–223.
    [3]
    Breuskin, I., Bodson, M., Thelen, N., Thiry, M., Borgs, L., Nguyen, L., Lefebvre, P. P., Malgrange, B., 2009. Sox10 promotes the survival of cochlear progenitors during the establishment of the organ of Corti. Dev. Biol. 335, 327-339.
    [4]
    Breuskin, I., Bodson, M., Thelen, N., Thiry, M., Borgs, L., Nguyen, L., Stolt, C., Wegner, M., Lefebvre, P.P., Malgrange, B., 2010. Glial but not neuronal development in the cochleo-vestibular ganglion requires Sox10. J. Neurochem. 114, 1827-1839.
    [5]
    Burley, S.K., Berman, H.M., Bhikadiya, C., Bi, C., Chen, L., Di Costanzo, L., Christie, C., Dalenberg, K., Duarte, J.M., Dutta, S., Feng, Z., Ghosh, S., Goodsell, D.S., Green, R.K., Guranovic, V., Guzenko, D., Hudson, B.P., Kalro, T., Liang, Y., Lowe, R., Namkoong, H., Peisach, E., Periskova, I., Prlic, A., Randle, C., Rose, A., Rose, P., Sala, R., Sekharan, M., Shao, C., Tan, L., Tao, Y.P., Valasatava, Y., Voigt, M., Westbrook, J., Woo, J., Yang, H., Young, J., Zhuravleva, M., Zardecki, C., 2019. RCSB Protein Data Bank: biological macromolecular structures enabling research and education in fundamental biology, biomedicine, biotechnology and energy. Nucleic Acids Res. 47, 464-474.
    [6]
    Chaoui, A., Watanabe, Y., Touraine, R., Baral, V., Goossens, M., Pingault, V., Bondurand, N., 2011. Identification and functional analysis of SOX10 missense mutations in different subtypes of Waardenburg syndrome. Hum. Mutat. 32, 1436-1449.
    [7]
    Chen, L., Guo, W.W., Ren, L.L., Yang, M.Y., Zhao, Y.F., Guo, Z.Y., Yi, H.J., Li, M.Z., Hu, Y.Q., Long, X., Sun, B.Y., Li, J.X., Zhai, S.Q., Zhang, T.H., Tian, S.L., Meng, Q.Y., Yu, N., Zhu, D., Tang, G.Q., Tang, Q.Z., Ren, L.M., Liu, K., Zhang, S.H., Che, T.D., Yu, Z.Q., Wu, N., Jing, L., Zhang, R., Cong, T., Chen, S.Q., Zhao, Y.Q., Zhang, Y., Bai, X.Q., Guo, Y., Zhao, L. D., Zhang, F.M., Zhao, H., Zhang, L., Hou, Z.H., Zhao, J.G., Li, J.A., Zhang, L.J., Sun, W., Zou, X.G., Wang, T., Ge, L.P., Liu, Z.H., Hu, X.X., Wang, J.Y., Yang, S.M. Li, N., 2016. A de novo silencer causes elimination of MITF-M expression and profound hearing loss in pigs. BMC Biol. 14, 52.
    [8]
    El-Brolosy, M.A., Kontarakis, Z., Rossi, A., Kuenne, C., Gunther, S., Fukuda, N., Kikhi, K., Boezio, G.L.M., Takacs, C.M., Lai, S.L., Fukuda, R., Gerri, C., Giraldez, A.J., Stainier, D.Y.R., 2019. Genetic compensation triggered by mutant mRNA degradation. Nature 568, 193-197.
    [9]
    Guo, W., Yi, H., Ren, L., Chen, L., Zhao, L., Sun, W., Yang, S.M., 2015. The morphology and electrophysiology of the cochlea of the miniature pig. Anat. Rec. 298, 494-500.
    [10]
    Hai, T., Cao, C., Shang, H., Guo, W., Mu, Y., Yang, S., Zhang, Y., Zheng, Q., Zhang, T., Wang, X., Liu, Y., Kong, Q., Li, K., Wang, D., Qi, M., Hong, Q., Zhang, R., Wang, X., Jia, Q., Wang, X., Qin, G., Li, Y., Luo, A., Jin, W., Yao, J., Huang, J., Zhang, H., Li, M., Xie, X., Zheng, X., Guo, K., Wang, Q., Zhang, S., Li, L., Xie, F., Zhang, Y., Weng, X., Yin, Z., Hu, K., Cong, Y., Zheng, P., Zou, H., Xin, L., Xia, J., Ruan, J., Li, H., Zhao, W., Yuan, J., Liu, Z., Gu, W., Li, M., Wang, Y., Wang, H., Yang, S., Liu, Z., Wei, H., Zhao, J., Zhou, Q., Meng, A., 2017a. Pilot study of large-scale production of mutant pigs by ENU mutagenesis. eLife 6, e26248.
    [11]
    Hai, T., Guo, W., Yao, J., Cao, C., Luo, A., Qi, M., Wang, X., Wang, X., Huang, J., Zhang, Y., Zhang, H., Wang, D., Shang, H., Hong, Q., Zhang, R., Jia, Q., Zheng, Q., Qin, G., Li, Y., Zhang, T., Jin, W., Chen, Z.Y., Wang, H., Zhou, Q., Meng, A., Wei, H., Yang, S., Zhao, J., 2017b. Creation of miniature pig model of human Waardenburg syndrome type 2A by ENU mutagenesis. Hum. Genet. 136, 1463-1475.
    [12]
    Hao, Q.Q., Li, L., Chen, W., Jiang, Q.Q., Ji, F., Sun, W., Wei, H., Guo, W.W., Yang, S.M., 2018. Key genes and pathways associated with inner ear malformation in SOX10 p.R109W mutation pigs. Front. Mol. Neurosci. 11, 181.
    [13]
    Hindson, B.J., Ness, K.D., Masquelier, D.A., Belgrader, P., Heredia, N.J., Makarewicz, A.J., Bright, I.J., Lucero, M.Y., Hiddessen, A.L., Legler, T.C., Kitano, T.K., Hodel, M.R., Petersen, J.F., Wyatt, P.W., Steenblock, E.R., Shah, P.H., Bousse, L.J., Troup, C.B., Mellen, J.C., Wittmann, D.K., Erndt, N.G., Cauley, T.H. Koehler, R.T., So, A.P., Dube, S., Rose, K.A., Montesclaros, L., Wang, S., Stumbo, D.P., Hodges, S.P., Romine, S., Milanovich, F.P., White, H.E., Regan, J.F., Karlin-Neumann, G.A., Hindson, C.M., Saxonov, S., Colston, B.W., 2011. High-throughput droplet digital PCR system for absolute quantitation of DNA copy number. Anal. Chem. 83, 8604-8610.
    [14]
    Inoue, K., Khajavi, M., Ohyama, T., Hirabayashi, S., Wilson, J., Reggin, J.D., Mancias, P., Butler, I.J., Wilkinson, M.F., Wegner, M., Lupski, J.R., 2004. Molecular mechanism for distinct neurological phenotypes conveyed by allelic truncating mutations. Nat. Genet. 36, 361-369.
    [15]
    Jackler, R.K., Luxford, W.M., House, W.F., 1987. Congenital malformations of the inner ear: a classification based on embryogenesis. Laryngoscope 97, 2-14.
    [16]
    Jauch, R., Ng, C.K., Narasimhan, K., Kolatkar, P.R., 2012. The crystal structure of the Sox4 HMG domain-DNA complex suggests a mechanism for positional interdependence in DNA recognition. Biochem. J. 443, 39-47.
    [17]
    Joint Center for Structural Genomics (JCSG), Partnership for Stem Cell Biology, 2012. Crystal structure of a HMG domain of transcription factor SOX-9 bound to DNA (SOX-9/DNA) from Homo sapiens at 2.77 A resolution. https://doi: 10.2210/pdb4euw/pdb.
    [18]
    Lefebvre, V., Dumitriu, B., Penzo-Mendez, A., Han, Y., Pallavi, B., 2007. Control of cell fate and differentiation by Sry-related high-mobility-group box (Sox) transcription factors. Int. J. Biochem. Cell. Biol. 39, 2195-2214.
    [19]
    Ma, J., Zhang, Z., Jiang, H.C., Sun, H., Ming, C., Zhao, L.P., Gao, Y.Q., Li, Z.C., Sun, M.H., Xiao, Y., Wu, G.L., Zhang, T.S., Ruan, B., 2019. A novel dominant mutation in the SOX10 gene in a Chinese family with Waardenburg syndrome type II. Mol. Med. Rep. 19, 1775-1780.
    [20]
    Ma, Z., Zhu, P., Shi, H., Guo, L., Zhang, Q., Chen, Y., Chen, S., Zhang, Z., Peng, J., Chen, J., 2019. PTC-bearing mRNA elicits a genetic compensation response via Upf3a and COMPASS components. Nature 568, 259-263.
    [21]
    Maione, L., Brailly-Tabard, S., Nevoux, J., Bouligand, J., Young, J., 2016. Reversal of congenital hypogonadotropic hypogonadism in a man with Kallmann syndrome due to SOX10 mutation. Clin. Endocrinol. 85, 988-989.
    [22]
    Malki, S., Boizet-Bonhoure, B., Poulat, F., 2010. Shuttling of SOX proteins. Int. J. Biochem. Cell. Biol. 42, 411-416.
    [23]
    Nagy, E., Maquat, L.E., 1998. A rule for termination-codon position within intron-containing genes: when nonsense affects RNA abundance. Trends. Biochem. Sci. 23, 198-199.
    [24]
    Nayak, C.S., Isaacson, G., 2003. Worldwide distribution of Waardenburg syndrome. Ann. Otol. Rhinol. Laryngol. 112, 817-820.
    [25]
    Ng, C.K., Palasingam, P., Venkatachalam, R., Baburajendran, N., Cheng, J., Jauch, R., Kolatkar, P.R., 2008. Purification, crystallization and preliminary X-ray diffraction analysis of the HMG domain of Sox17 in complex with DNA. Acta. Crystallogr. Sect. F. Struct. Biol. Cryst. Commun. 64, 1184-1187.
    [26]
    Palasingam, P., Jauch, R., Ng, C.K., Kolatkar, P.R., 2009. The structure of Sox17 bound to DNA reveals a conserved bending topology but selective protein interaction platforms. J. Mol. Biol. 388, 619-630.
    [27]
    Parkash, R., Ranga, P., Aggarwal, D.D., 2014 Sep. Developmental acclimation to low or high humidity conditions affect starvation and heat resistance of Drosophila melanogaster. Comp. Biochem. Physiol. A Mol. Integr. Physiol. 175, 46–56, Epub 2014 May 17. PMID: 24845200.
    [28]
    Pingault, V., Bodereau, V., Baral, V., Marcos, S., Watanabe, Y., Chaoui, A., Fouveaut, C., Leroy, C., Vérier-Mine, O., Francannet, C., Dupin-Deguine, D., Archambeaud, F., Kurtz, F.J., Young, J., Bertherat, J., Marlin, S., Goossens, M., Hardelin, J.P., Dodé, C., Bondurand, N., 2013 May 2. Loss-of-function mutations in SOX10 cause Kallmann syndrome with deafness. Am. J. Hum. Genet. 92 (5), 707–724.
    [29]
    Pingault, V., Bondurand, N., Kuhlbrodt, K., Goerich, D.E., Prehu, M.O., Puliti, A., Herbarth, B., Hermans-Borgmeyer, I., Legius, E., Matthijs, G., Amiel, J., Lyonnet, S., Ceccherini, I., Romeo, G., Smith, J.C., Read, A.P., Wegner, M., Goossens, M., 1998. SOX10 mutations in patients with Waardenburg-Hirschsprung disease. Nat. Genet. 18, 171-173.
    [30]
    Pingault, V., Ente, D., Dastot-Le Moal, F., Goossens, M., Marlin, S., Bondurand, N., 2010. Review and update of mutations causing Waardenburg syndrome. Hum. Mutat. 31, 391-406.
    [31]
    Pingault, V., Girard, M., Bondurand, N., Dorkins, H., Van Maldergem, L., Mowat, D., Shimotake, T., Verma, I., Baumann, C., Goossens, M., 2002. SOX10 mutations in chronic intestinal pseudo-obstruction suggest a complex physiopathological mechanism. Hum. Genet. 111, 198-206.
    [32]
    Pingault, V., Pierre-Louis, L., Chaoui, A., Verloes, A., Sarrazin, E., Brandberg, G., Bondurand, N., Uldall, P., Manouvrier-Hanu, S., 2014. Phenotypic similarities and differences in patients with a p.Met112Ile mutation in SOX10. Am. J. Med. Genet. A. 164A, 2344-2350.
    [33]
    Pinheiro, L.B., Coleman, V.A., Hindson, C.M., Herrmann, J., Hindson, B.J., Bhat, S., Emslie, K.R., 2012. Evaluation of a droplet digital polymerase chain reaction format for DNA copy number quantification. Anal. Chem. 84, 1003-1011.
    [34]
    Posey, J.E., Harel, T., Liu, P., Rosenfeld, J.A., James, R.A., Coban Akdemir, Z.H., Walkiewicz, M., Bi, W., Xiao, R., Ding, Y., Xia, F., Beaudet, A.L., Muzny, D.M., Gibbs, R.A., Boerwinkle, E., Eng, C.M., Sutton, V.R., Shaw, C.A., Plon, S.E., Yang, Y., Lupski, J.R., 2017. Resolution of disease phenotypes resulting from multilocus genomic variation. N. Engl. J. Med. 376, 21-31.
    [35]
    Sehnal, D., Rose, A.S., Koca, J., Burley, S.K., Velankar, S., 2018. Mol∗: Towards a common library and tools for web molecular graphics. In proceedings of the workshop on molecular graphics and visual analysis of molecular data (MolVA '18). Eurographics Association, Goslar, DEU, 29-33.
    [36]
    Sennaroglu, L., Bajin, M.D., 2017. Classification and current management of inner ear malformations. Balk. Med. J. 34, 397-411.
    [37]
    Sennaroglu, L., Saatci, I., 2002. A new classification for cochleovestibular malformations. Laryngoscope 112, 2230-2241.
    [38]
    Sim, H., Argentaro, A., Harley, V.R., 2008. Boys, girls and shuttling of SRY and SOX9. Trends. Endocrinol. Metab. 19, 213-222.
    [39]
    Song, J., Feng, Y., Acke, F.R., Coucke, P., Vleminckx, K., Dhooge, I.J., 2016. Hearing loss in Waardenburg syndrome: a systematic review. Clin. Genet. 89, 416-425.
    [40]
    Sun, L., Li, X., Shi, J., Pang, X., Hu, Y., Wang, X., Wu, H., Yang, T., 2016. Molecular etiology and genotype-phenotype correlation of Chinese Han deaf patients with type I and type II Waardenburg Syndrome. Sci. Rep. 6, 35498.
    [41]
    Suzuki, E., Izumi, Y., Chiba, Y., Horikawa, R., Matsubara, Y., Tanaka, M., Ogata, T., Fukami, M., Naiki, Y., 2015. Loss-of-function SOX10 mutation in a patient with Kallmann Syndrome, hearing loss, and iris hypopigmentation. Horm. Res. Paediatr. 84, 212-216.
    [42]
    Tamayo, M.L., Gelvez, N., Rodriguez, M., Florez, S., Varon, C., Medina, D., Bernal, J.E., 2008. Screening program for Waardenburg syndrome in Colombia: clinical definition and phenotypic variability. Am. J. Med. Genet. A. 146A, 1026-1031.
    [43]
    Thorogate, R., Torok, K., 2007. Role of Ca2+ activation and bilobal structure of calmodulin in nuclear and nucleolar localization. Biochem. J. 402, 71-80.
    [44]
    Tudrej, K.B., Czepielewska, E., Kozlowska-Wojciechowska, M., 2017. SOX10-MITF pathway activity in melanoma cells. Arch. Med. Sci. 13, 1493-1503.
    [45]
    Wang, F., Zhao, S., Xie, Y., Yang, W., Mo, Z., 2018. De novo SOX10 nonsense mutation in a patient with Kallmann Syndrome, deafness, iris hypopigmentation, and hyperthyroidism. Ann. Clin. Lab. Sci. 48, 248-252.
    [46]
    Yu, Y., Liu, W., Chen, M., Yang, Y., Yang, Y., Hong, E., Lu, J., Zheng, J., Ni, X., Guo, Y., Zhang, J., 2020. Two novel mutations of PAX3 and SOX10 were characterized as genetic causes of Waardenburg Syndrome. Mol. Genet. Genom. Med. 8, e1217.
    [47]
    Zaman, A., Capper, R., Baddoo, W., 2015. Waardenburg syndrome: more common than you think! Clin. Otolaryngol. 40, 44-48.
    [48]
    Zhang, H., Chen, H., Luo, H., An, J., Sun, L., Mei, L., He, C., Jiang, L., Li, J.D., Feng, Y., 2012. Functional analysis of Waardenburg syndrome-associated PAX3 and SOX10 mutations: report of a dominant-negative SOX10 mutation in Waardenburg syndrome type II. Hum. Genet. 131, 491-503.
    [49]
    Zhou, X., Wang, L., Du, Y., Xie, F., Li, L., Liu, Y., Liu, C., Wang, S., Zhang, S., Huang, X., Wang, Y., Wei, H., 2016. Efficient generation of gene-modified pigs harboring precise orthologous human mutation via CRISPR/Cas9-induced homology-directed repair in zygotes. Hum. Mutat. 37, 110-118.
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