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Volume 45 Issue 7
Jul.  2018
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Article Contents

IRESfinder: Identifying RNA internal ribosome entry site in eukaryotic cell using framed k-mer features

doi: 10.1016/j.jgg.2018.07.006
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  • Corresponding author: E-mail address: xfsong@nuaa.edu.cn (Xiaofeng Song)
  • Received Date: 2018-01-09
  • Accepted Date: 2018-07-03
  • Rev Recd Date: 2018-06-01
  • Available Online: 2018-07-18
  • Publish Date: 2018-07-20
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  • [1]
    Baird, S.D., Lewis, S.M., Turcotte, M. et al. A search for structurally similar cellular internal ribosome entry sites Nucleic Acids Res., 35 (2007),pp. 4664-4677
    [2]
    Beltran, M., Puig, I., Peña, C. et al. Genes Dev., 22 (2008),pp. 756-769
    [3]
    Hershey, J.W., Sonenberg, N., Mathews, M.B. Principles of translational control: an overview Cold Spring Harbor Perspect. Biol., 4 (2012)
    [4]
    Hong, J.J., Wu, T.Y., Chang, T.Y. et al. PLoS One, 8 (2013),p. e79288
    [5]
    Huang, J., Zhou, N., Watabe, K. et al. Long non-coding RNA UCA1 promotes breast tumor growth by suppression of p27 (Kip1) Cell Death Dis., 5 (2015)
    [6]
    Hung, C.Y., Yang, W.B., Wang, S.A. et al. Nucleolin enhances internal ribosomal entry site (IRES)-mediated translation of Sp1 in tumorigenesis Biochim. Biophys. Acta, 1843 (2014),pp. 2843-2854
    [7]
    Jo, O.D., Martin, J., Bernath, A. et al. Heterogeneous nuclear ribonucleoprotein A1 regulates cyclin D1 and c-myc internal ribosome entry site function through Akt signaling J. Biol. Chem., 283 (2008),pp. 23274-23287
    [8]
    Kolekar, P., Pataskar, A., Kulkarni-Kale, U. et al. IRESPred: web server for prediction of cellular and viral internal ribosome entry site (IRES) Sci. Rep., 6 (2016),p. 27436
    [9]
    Komar, A.A., Hatzoglou, M. Cellular IRES-mediated translation: the war of ITAFs in pathophysiological states Cell Cycle, 10 (2011),pp. 229-240
    [10]
    Legnini, I., Di Timoteo, G., Rossi, F. et al. Circ-ZNF609 is a circular RNA that can be translated and functions in myogenesis Mol. Cell, 66 (2017),pp. 22-37
    [11]
    Pelletier, J., Sonenberg, N. Internal initiation of translation of eukaryotic mRNA directed by a sequence derived from poliovirus RNA Nature, 334 (1988),pp. 320-325
    [12]
    Sharathchandra, A., Katoch, A., Das, S. IRES mediated translational regulation of p53 isoforms Wiley Interdiscip. Rev. RNA, 5 (2014),pp. 131-139
    [13]
    Spriggs, K., Bushell, M., Mitchell, S. et al. Internal ribosome entry segment-mediated translation during apoptosis: the role of IRES-trans-acting factors Cell Death Differ., 12 (2005),pp. 585-591
    [14]
    Terenin, I.M., Smirnova, V.V., Andreev, D.E. et al. A researcher's guide to the galaxy of IRESs Cell. Mol. Life Sci., 74 (2017),pp. 1431-1455
    [15]
    Weingarten-Gabbay, S., Elias-Kirma, S., Nir, R. et al. Systematic discovery of cap-independent translation sequences in human and viral genomes Science, 351 (2016)
    [16]
    Wu, T.Y., Hsieh, C.C., Hong, J.J. et al. IRSS: a web-based tool for automatic layout and analysis of IRES secondary structure prediction and searching system in silico BMC Bioinf., 10 (2009),p. 160
    [17]
    Xia, X., Holcik, M. Strong eukaryotic IRESs have weak secondary structure PLoS One, 4 (2009),p. e4136
    [18]
    Yang, Y., Fan, X., Mao, M. et al. Cell Res., 27 (2017),p. 626
    [19]
    Yang, Y., Gao, X., Zhang, M. et al. Novel role of FBXW7 circular RNA in repressing glioma tumorigenesis J. Natl. Cancer Inst., 110 (2018)
    [20]
    Zhang, M., Huang, N., Yang, X. et al. A novel protein encoded by the circular form of the SHPRH gene suppresses glioma tumorigenesis Oncogene, 37 (2018),p. 1805
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