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Volume 45 Issue 7
Jul.  2018
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Article Contents

VCSRA: A fast and accurate multiple sequence alignment algorithm with a high degree of parallelism

doi: 10.1016/j.jgg.2018.07.004
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  • Corresponding author: E-mail address: zouquan@nclab.net (Quan Zou); E-mail address: slpeng@hnu.edu.cn (Shaoliang Peng)
  • Received Date: 2018-01-09
  • Accepted Date: 2018-07-13
  • Rev Recd Date: 2018-07-12
  • Available Online: 2018-07-17
  • Publish Date: 2018-07-20
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  • [1]
    Bahr, A., Thompson, J.D., Thierry, J.C. et al. BAliBASE (Benchmark Alignment dataBASE): enhancements for repeats, transmembrane sequences and circular permutations Nucleic Acids Res., 29 (2001),pp. 323-326
    [2]
    Chatzou, M., Magis, C., Chang, J.M. et al. Multiple sequence alignment modeling: methods and applications Brief. Bioinf., 17 (2016),pp. 1009-1023
    [3]
    Katoh, K., Standley, D.M. MAFFT multiple sequence alignment software version 7: improvements in performance and usability Mol. Biol. Evol., 30 (2013),pp. 772-780
    [4]
    Lassmann, T., Sonnhammer, E.L. Kalign – an accurate and fast multiple sequence alignment algorithm BMC Bioinf., 6 (2005),pp. 1-9
    [5]
    Needleman, S.B., Wunsch, C.D. A general method applicable to the search for similarities in the amino acid sequence of two proteins J. Mol. Biol., 48 (1970),pp. 443-453
    [6]
    Smith, T.F., Waterman, M.S. Identification of common molecular subsequences J. Mol. Biol., 147 (1981),pp. 195-197
    [7]
    Taylor, W.R. Hierarchical method to align large numbers of biological sequences Methods Enzymol., 183 (1990),pp. 456-474
    [8]
    Ukkonen, E. On-line construction of suffix trees Algorithmica, 14 (1995),pp. 249-260
    [9]
    Wang, L., Jiang, T. On the complexity of multiple sequence alignment J. Comput. Biol., 1 (1994),pp. 337-348
    [10]
    Zou, Q., Guo, M.Z., Wang, X.K. et al. An algorithm for DNA multiple sequence alignment based on center star method and keyword tree Acta Electron. Sin., 38 (2009),pp. 1746-1750
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