Cotton functional genomics reveals global insight into genome evolution and fiber development

Zhiguo Wu; Yan Yang; Gai Huang; Jing Lin; Yuying Xia; Yuxian Zhu

doi:10.1016/j.jgg.2017.09.009

Volume 44 Issue 11

Nov. 2017

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Cotton functional genomics reveals global insight into genome evolution and fiber development

doi: 10.1016/j.jgg.2017.09.009

a
College of Life Sciences, Wuhan University, Wuhan 430072, China
b
Institute for Advanced Studies, Wuhan University, Wuhan 430072, China
c
State Key Laboratory of Protein and Plant Gene Research, College of Life Sciences, Peking University, Beijing 100871, China

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Corresponding author: E-mail address: zhuyx@whu.edu.cn (Yuxian Zhu)
Received Date: 2017-06-15
Accepted Date: 2017-09-25
Rev Recd Date: 2017-08-22

Available Online: 2017-11-14

Publish Date: 2017-11-20

Abstract

Abstract

Due to the economic value of natural textile fiber, cotton has attracted much research attention, which has led to the publication of two diploid genomes and two tetraploid genomes. These big data facilitate functional genomic study in cotton, and allow researchers to investigate cotton genome structure, gene expression, and protein function on the global scale using high-throughput methods. In this review, we summarized recent studies of cotton genomes. Population genomic analyses revealed the domestication history of cultivated upland cotton and the roles of transposable elements in cotton genome evolution. Alternative splicing of cotton transcriptomes was evaluated genome-widely. Several important gene families like MYC, NAC, Sus and GhPLDα1 were systematically identified and classified based on genetic structure and biological function. High-throughput proteomics also unraveled the key functional proteins correlated with fiber development. Functional genomic studies have provided unprecedented insights into global-scale methods for cotton research.
- Cotton,
- Functional genomics,
- Genome evolution,
- Fiber development

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