Identification and Profiling of Known and Novel Fiber MicroRNAs during the Secondary Wall Thickening Stage in Cotton (Gossypium hirsutum) via High-Throughput Sequencing

Dingwei Yu; Yanmei Wang; Wei Xue; Shuli Fan; Shuxun Yu; Jin-Yuan Liu

doi:10.1016/j.jgg.2014.08.002

Volume 41 Issue 10

Oct. 2014

Turn off MathJax

Article Contents

Article Navigation > Journal of Genetics and Genomics > 2014 > 41(10): 553-556

PDF( 734 KB)

Identification and Profiling of Known and Novel Fiber MicroRNAs during the Secondary Wall Thickening Stage in Cotton (Gossypium hirsutum) via High-Throughput Sequencing

doi: 10.1016/j.jgg.2014.08.002

a
Laboratory of Plant Molecular Biology, Center for Plant Biology, School of Life Sciences, Tsinghua University, Beijing 100084, China
b
State Key Laboratory of Cotton Biology, Institute of Cotton Research, Chinese Academy of Agricultural Sciences, Anyang, Henan 455000, China

More Information

Corresponding author: E-mail address: yu@cricaas.com.cn (Shuxun Yu); E-mail address: liujy@mail.tsinghua.edu.cn (Jin-Yuan Liu)
Received Date: 2014-03-03
Accepted Date: 2014-08-06
Rev Recd Date: 2014-07-08

Available Online: 2014-08-19

Publish Date: 2014-10-20

Abstract

FullText(HTML)

References(17)

References

[1]	Abdurakhmonov, I.Y., Devor, E.J., Buriev, Z.T. et al. BMC Plant Biol., 8 (2008),p. 93
[2]	Bonnet, E., Wuyts, J., Rouze, P. et al. Evidence that microRNA precursors, unlike other non-coding RNAs, have lower folding free energies than random sequences Bioinformatics, 20 (2004),pp. 2911-2917
[3]	Brill, E., van Thournout, M., White, R.G. et al. A novel isoform of sucrose synthase is targeted to the cell wall during secondary cell wall synthesis in cotton fiber Plant Physiol., 157 (2011),pp. 40-54
[4]	Du, S.J., Dong, C.J., Zhang, B. et al. J. Proteomics, 82 (2013),pp. 113-129
[5]	Guan, X., Pang, M., Nah, G. et al. Nat. Commun., 5 (2014),p. 3050
[6]	Jacob-Wilk, D., Kurek, I., Hogan, P. et al. Proc. Natl. Acad. Sci. USA, 103 (2006),pp. 12191-12196
[7]	Li, Q., Jin, X., Zhu, Y.X. J. Genet. Genomics, 39 (2012),pp. 351-360
[8]	Lu, C., Tej, S.S., Luo, S. et al. Elucidation of the small RNA component of the transcriptome Science, 309 (2005),pp. 1567-1569
[9]	Meinert, M.C., Delmer, D.P. Changes in biochemical composition of the cell wall of the cotton fiber during development Plant Physiol., 59 (1977),pp. 1088-1097
[10]	Meyers, B.C., Axtell, M.J., Bartel, B. et al. Criteria for annotation of plant microRNAs Plant Cell, 20 (2008),pp. 3186-3190
[11]	Pang, M., Woodward, A.W., Agarwal, V. et al. Genome Biol., 10 (2009),p. R122
[12]	Scheible, W.R., Pauly, M. Glycosyltransferases and cell wall biosynthesis: novel players and insights Curr. Opin. Plant Biol., 7 (2004),pp. 285-295
[13]	Wang, K., Wang, Z., Li, F. et al. Nat. Genet., 44 (2012),pp. 1098-1103
[14]	Wang, Z.M., Xue, W., Dong, C.J. et al. A comparative miRNAome analysis reveals seven fiber initiation-related and 36 novel miRNAs in developing cotton ovules Mol. Plant, 5 (2012),pp. 889-900
[15]	Wendel, J.F., Brubaker, C.L., Percival, A.E. Am. J. Bot., 79 (1992),pp. 1291-1310
[16]	Xue, W., Wang, Z., Du, M. et al. Genome-wide analysis of small RNAs reveals eight fiber elongation-related and 257 novel microRNAs in elongating cotton fiber cells BMC Genomics, 14 (2013),p. 629
[17]	Yang, Y.W., Bian, S.M., Yao, Y. et al. Comparative proteomic analysis provides new insights into the fiber elongating process in cotton J. Proteome Res., 7 (2008),pp. 4623-4637