[1] |
Alleman, M., Sidorenko, L., McGinnis, K. et al. An RNA-dependent RNA polymerase is required for paramutation in maize Nature, 442 (2006),pp. 295-298
|
[2] |
Banaei Moghaddam, A.M., Fuchs, J., Czauderna, T. et al. Theor. Appl. Genet., 120 (2010),pp. 215-226
|
[3] |
Banaei Moghaddam, A.M., Roudier, F., Seifert, M. et al. Plant J., 67 (2011),pp. 691-700
|
[4] |
Barber, W.T., Zhang, W., Win, H. et al. Repeat associated small RNAs vary among parents and following hybridization in maize Proc. Natl. Acad. Sci. USA, 109 (2012),pp. 10444-10449
|
[5] |
Berger, S.L. The complex language of chromatin regulation during transcription Nature, 447 (2007),pp. 407-412
|
[6] |
Birchler, J.A., Auger, D.L., Riddle, N.C. In search of the molecular basis of heterosis Plant Cell, 15 (2003),pp. 2236-2239
|
[7] |
Bruce, A.B. The mendelian theory of heredity and the augmentation of vigor Science, 32 (1910),pp. 627-628
|
[8] |
Chan, S.W., Henderson, I.R., Jacobsen, S.E. Nat. Rev. Genet., 6 (2005),pp. 351-360
|
[9] |
Chen, F., He, G., He, H. et al. Expression analysis of miRNAs and highly-expressed small RNAs in two rice subspecies and their reciprocal hybrids J. Integr. Plant Biol., 52 (2010),pp. 971-980
|
[10] |
Chen, X. Small RNAs and their roles in plant development Annu. Rev. Cell Dev. Biol., 25 (2009),pp. 21-44
|
[11] |
Chodavarapu, R.K., Feng, S., Ding, B. et al. Transcriptome and methylome interactions in rice hybrids Proc. Natl. Acad. Sci. USA, 109 (2012),pp. 12040-12045
|
[12] |
Davenport, C.B. Degeneration, albinism and inbreeding Science, 28 (1908),pp. 454-455
|
[13] |
Ding, D., Wang, Y., Han, M. et al. MicroRNA transcriptomic analysis of heterosis during maize seed germination PLoS ONE, 7 (2012),p. e39578
|
[14] |
East, E.M.
|
[15] |
Greaves, I.K., Groszmann, M., Ying, H. et al. Proc. Natl. Acad. Sci. USA, 109 (2012),pp. 3570-3575
|
[16] |
Greaves, I., Groszmann, M., Dennis, E.S. et al. Trans-chromosomal methylation Epigenetics, 7 (2012),pp. 800-805
|
[17] |
Groszmann, M., Greaves, I.K., Albertyn, Z.I. et al. Proc. Natl. Acad. Sci. USA, 108 (2011),pp. 2617-2622
|
[18] |
Ha, M., Lu, J., Tian, L. et al. Proc. Natl. Acad. Sci. USA, 106 (2009),pp. 17835-17840
|
[19] |
He, G., Elling, A.A., Deng, X.W. The epigenome and plant development Annu. Rev. Plant Biol., 62 (2011),pp. 411-435
|
[20] |
He, G., Zhu, X., Elling, A.A. et al. Global epigenetic and transcriptional trends among two rice subspecies and their reciprocal hybrids Plant Cell, 22 (2010),pp. 17-33
|
[21] |
Henderson, I.R., Jacobsen, S.E. Epigenetic inheritance in plants Nature, 447 (2007),pp. 418-424
|
[22] |
Hochholdinger, F., Hoecker, N. Towards the molecular basis of heterosis Trends Plant Sci., 12 (2007),pp. 427-432
|
[23] |
Jin, H., Hu, W., Wei, Z. et al. Theor. Appl. Genet., 117 (2008),pp. 1271-1279
|
[24] |
Jones, D.F. Dominance of linked factors as a means of accounting for heterosis Genetics, 2 (1917),pp. 466-479
|
[25] |
Keeble, F., Pellew, C. J. Genet., 1 (1910),pp. 47-56
|
[26] |
Kenan-Eichler, M., Leshkowitz, D., Tal, L. et al. Wheat hybridization and polyploidization results in deregulation of small RNAs Genetics, 188 (2011),pp. 263-272
|
[27] |
Kouzarides, T. Chromatin modifications and their function Cell, 128 (2007),pp. 693-705
|
[28] |
Law, J.A., Jacobsen, S.E. Establishing, maintaining and modifying DNA methylation patterns in plants and animals Nat. Rev. Genet., 11 (2010),pp. 204-220
|
[29] |
Li, B., Carey, M., Workman, J.L. The role of chromatin during transcription Cell, 128 (2007),pp. 707-719
|
[30] |
Li, C., Huang, L., Xu, C. et al. Altered levels of histone deacetylase OsHDT1 affect differential gene expression patterns in hybrid rice PLoS ONE, 6 (2011),p. e21789
|
[31] |
Li, X., Wang, X., He, K. et al. High-resolution mapping of epigenetic modifications of the rice genome uncovers interplay between DNA methylation, histone methylation, and gene expression Plant Cell, 20 (2008),pp. 259-276
|
[32] |
Li, Y., Varala, K., Moose, S.P. et al. PLoS ONE, 7 (2012),p. e47043
|
[33] |
Liu, C., Lu, F., Cui, X. et al. Histone methylation in higher plants Annu. Rev. Plant Biol., 61 (2010),pp. 395-420
|
[34] |
Ni, Z., Kim, E.D., Ha, M. et al. Altered circadian rhythms regulate growth vigour in hybrids and allopolyploids Nature, 457 (2009),pp. 327-331
|
[35] |
Nobuta, K., Lu, C., Shrivastava, R. et al. Proc. Natl. Acad. Sci. USA, 105 (2008),pp. 14958-14963
|
[36] |
Powers, L. An expansion of Jones's theory for the explanation of heterosis Am. Nat., 78 (1944),pp. 275-280
|
[37] |
Richards, C.L., Bossdorf, O., Verhoeven, K.J. Understanding natural epigenetic variation New Phytol., 187 (2010),pp. 562-564
|
[38] |
Richards, E.J. Inherited epigenetic variation–revisiting soft inheritance Nat. Rev. Genet., 7 (2006),pp. 395-401
|
[39] |
Shahbazian, M.D., Grunstein, M. Functions of site-specific histone acetylation and deacetylation Annu. Rev. Biochem., 76 (2007),pp. 75-100
|
[40] |
Shen, H., He, H., Li, J. et al. Plant Cell, 24 (2012),pp. 875-892
|
[41] |
Shull, G.H. The composition of a field of maize J. Hered., os-4 (1908),pp. 296-301
|
[42] |
Song, G.S., Zhai, H.L., Peng, Y.G. et al. Comparative transcriptional profiling and preliminary study on heterosis mechanism of super-hybrid rice Mol. Plant, 3 (2010),pp. 1012-1025
|
[43] |
Springer, N.M., Stupar, R.M. Allelic variation and heterosis in maize: how do two halves make more than a whole? Genome Res., 17 (2007),pp. 264-275
|
[44] |
Swanson-Wagner, R.A., Jia, Y., DeCook, R. et al. Proc. Natl. Acad. Sci. USA, 103 (2006),pp. 6805-6810
|
[45] |
Wang, X., Elling, A.A., Li, X. et al. Genome-wide and organ-specific landscapes of epigenetic modifications and their relationships to mRNA and small RNA transcriptomes in maize Plant Cell, 21 (2009),pp. 1053-1069
|
[46] |
Wei, G., Tao, Y., Liu, G. et al. A transcriptomic analysis of superhybrid rice LYP9 and its parents Proc. Natl. Acad. Sci. USA, 106 (2009),pp. 7695-7701
|
[47] |
Yu, S.B., Li, J.X., Xu, C.G. et al. Importance of epistasis as the genetic basis of heterosis in an elite rice hybrid Proc. Natl. Acad. Sci. USA, 94 (1997),pp. 9226-9231
|
[48] |
Zhang, H.Y., He, H., Chen, L.B. et al. A genome-wide transcription analysis reveals a close correlation of promoter INDEL polymorphism and heterotic gene expression in rice hybrids Mol. Plant, 1 (2008),pp. 720-731
|
[49] |
Zhang, X., Yazaki, J., Sundaresan, A. et al. Cell, 126 (2006),pp. 1189-1201
|
[50] |
Zhang, X. The epigenetic landscape of plants Science, 320 (2008),pp. 489-492
|
[51] |
Zhao, X., Chai, Y., Liu, B. Epigenetic inheritance and variation of DNA methylation level and pattern in maize intra-specific hybrids Plant Sci., 172 (2007),pp. 930-938
|
[52] |
Zhu, J.K. Active DNA demethylation mediated by DNA glycosylases Annu. Rev. Genet., 43 (2009),pp. 143-166
|
[53] |
Zilberman, D., Gehring, M., Tran, R.K. et al. Nat. Genet., 39 (2007),pp. 61-69
|