The complete mitogenome of the Chinese bush cricket, Gampsocleis gratiosa (Orthoptera: Tettigonioidea)

Zhijun Zhou; Fuming Shi; Yuan Huang

doi:10.1016/S1673-8527(08)60050-8

Volume 35 Issue 6

Jun. 2008

Turn off MathJax

Article Contents

Article Navigation > Journal of Genetics and Genomics > 2008 > 35(6): 341-348

PDF( 365 KB)

The complete mitogenome of the Chinese bush cricket, Gampsocleis gratiosa (Orthoptera: Tettigonioidea)

doi: 10.1016/S1673-8527(08)60050-8

a
College of Life Science, Shaanxi Normal University, Xi'an 710062, China
b
College of Life Science, Hebei University, Baoding 071002, China

More Information

Corresponding author: E-mail address: yuanh@snnu.edu.cn (Yuan Huang)
Received Date: 2008-01-01
Accepted Date: 2008-03-06
Rev Recd Date: 2008-03-03

Available Online: 2008-06-18

Publish Date: 2008-06-20

Abstract

Abstract

The complete mitochondrial genome (mitogenome) of Gampsocleis gratiosa was determined. The 15,929 bp in the size of G. gratiosa mitogenome contains a typical gene content, base composition, and codon usage found in metazoan. All 13 protein coding genes (PCGs) of the G. gratiosa mitogenome start with a typical ATN codon. The usual termination codons (TAA and TAG) were found from 10 PCGs. However, the atp6, nad4, and nad5 had incomplete termination codon (T). The anticodons of all tRNAs are identical to those observed in Drosophila yakuba and Locusta migratoria, and can be folded in the form of a typical clover leaf structure except for trnS (AGN). The secondary structure of trnS (AGN) was drawn according with the Steinberg-Cedergren tertiary structure. The A+T content (67.4%) of the A+T-rich region is relatively lower among the mitogenome regions, in contrast, it usually contains the highest A+T content for most insects. Two isolated sequence repeat regions (202 bp) were found in the A+T-rich region with mapping and secondary structure information.
- mitogenome,
- Gampsocleis gratiosa,
- Tettigonioidea,
- sequence repeat regions

FullText(HTML)

References(30)

References

[1]	Anderson, S., Bankier, A.T., Barrell, B.G. et al. Sequence and organization of the human mitogenome Nature, 290 (1981),pp. 457-465
[2]	Bae, J.S., Kim, I., Sohn, H.D. et al. Mol. Phylogenet. Evol., 32 (2004),pp. 978-985
[3]	Bibb, M.J., VanEtten, R.A., Wright, C.T. et al. Sequence and gene organization of mouse mitochondrial DNA Cell, 26 (1981),pp. 167-180
[4]	Boore, J.L. Animal mitogenomes Nucleic Acids Res., 27 (1999),pp. 1767-1780
[5]	Cameron, S.L., Barker, S.C., Whiting, M.F. Mitochondrial genomics and the new insect order Mantophasmatodea Mol. Phylogenet. Evol., 38 (2006),pp. 274-279
[6]	Clary, D.O., Wolstenholme, D.R. J. Mol. Evol., 22 (1985),pp. 252-271
[7]	Fenn, J.D., Cameron, S.L., Whiting, M.F. Insect Mol. Biol., 16 (2007),pp. 239-252
[8]	Flook, P.K., Rowell, C.H., Gellissen, G. J. Mol. Evol., 41 (1995),pp. 928-941
[9]	Friedrich, M., Muqim, N. Mol. Phylogenet. Evol., 26 (2003),pp. 502-512
[10]	Hu, M., Jex, A.R., Campbell, B.E. et al. Long PCR amplification of the entire mitogenome from individual helminths for direct sequencing Nature Protoc., 2 (2007),pp. 2339-2444
[11]	Hwang, U.W., Friedrich, M., Tautz, D. et al. Mitochondrial protein phylogeny joins myriapods with chelicerates Nature, 413 (2001),pp. 154-157
[12]	Hwang, U.W., Park, C.J., Yong, T.S. et al. One-step PCR amplification of complete arthropod mitogenomes Mol. Phylogenet. Evol., 19 (2001),pp. 345-352
[13]	Kim, I., Cha, S.Y., Yoon, M.H. et al. Gene, 353 (2005),pp. 155-168
[14]	Kumar, S., Tamura, K., Nei, M. MEGA3: Integrated software for molecular evolutionary genetics analysis and sequence alignment Brief Bioinform., 5 (2004),pp. 150-163
[15]	Liu, N., Hu, J., Huang, Y. Amplification of grasshoppers complete mitogenomes using long PCR Chin. J. Zool., 41 (2006),pp. 61-65
[16]	Lowe, T.M., Eddy, S.R. tRNAscan-SE: A program for improved detection of transfer RNA genes in genomic sequence Nucleic Acids Res., 25 (1997),pp. 955-964
[17]	Ojala, D., Montoya, J, Attardi, G tRNA punctuation model of RNA processing in human mitochondria Nature, 290 (1981),pp. 470-474
[18]	Robinson, D.J., Hall, M.J. Sound signalling in Orthoptera Adv. Insect Physiol., 29 (2002),pp. 151-278
[19]	Shao, R., Barker, S.C. Mol. Biol. Evol., 20 (2003),pp. 362-370
[20]	Shao, R., Campbell, N.J., Schmidt, E.R. et al. Increased rate of gene rearrangement in the mitogenomes of three orders of hemipteroid insects Mol. Biol. Evol., 18 (2001),pp. 1828-1832
[21]	Simon, C., Frati, F., Bekenbach, A. et al. Evolution, weighting and phylogenetic utility of mitochondrial gene sequences and a compilation of conserved polymerase chain-reaction primers Ann. Entomol. Soc. Am., 87 (1994),pp. 651-701
[22]	Staden, R., Beal, K.F., Bonfield, J.K. The Staden package, 1998 Methods Mol. Biol., 132 (2000),pp. 115-130
[23]	Steinberg, S., Leclerc, F., Cedergren, R. Structural rules and conformational compensations in the tRNA L-form J. Mol. Biol., 266 (1997),pp. 269-282
[24]	Stewart, J.B., Beckenbach, A.T. Genome, 48 (2005),pp. 46-54
[25]	Thompson, J.D., Gibson, T.J., Plewniak, F. et al. The CLUSTAL_X window interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools Nucleic Acids Res., 25 (1997),pp. 4876-4882
[26]	Wolstenholme, D.R. Animal mitochondrial DNA: Structure and evolution Int. Rev. Cytol., 141 (1992),pp. 173-216
[27]	Yamauchi, M.M., Miya, M.U., Nishida, M. Use of a PCR-based approach for sequencing whole mitogenomes of insects: Two examples (cockroach and dragonfly) based on the method developed for decapod crustaceans Insect Mol. Biol., 13 (2004),pp. 435-442
[28]	Yukuhiro, K., Sezutsu, H., Itoh, M. et al. Mol. Biol. Evol., 19 (2002),pp. 1385-1389
[29]	Zagryadskaya, E.I., Kotlova, N., Steinberg, S.V. Key elements in maintenance of the tRNA L-shape J. Mol. Biol., 340 (2004),pp. 435-444
[30]	Zhou, Z.J., Huang, Y., Shi, F.M. Genome, 50 (2007),pp. 855-866