Genome evolution trend of common carp (Cyprinus carpio L.) as revealed by the analysis of microsatellite loci in a gynogentic family

Yan Zhang; Liqun Liang; Peng Jiang; Dayu Li; Cuiyun Lu; Xiaowen Sun

doi:10.1016/S1673-8527(08)60015-6

Volume 35 Issue 2

Feb. 2008

Turn off MathJax

Article Contents

Article Navigation > Journal of Genetics and Genomics > 2008 > 35(2): 97-103

PDF( 390 KB)

Genome evolution trend of common carp (Cyprinus carpio L.) as revealed by the analysis of microsatellite loci in a gynogentic family

doi: 10.1016/S1673-8527(08)60015-6

Yan Zhang^{a, b},
Liqun Liang^a,
Peng Jiang^{a, b},
Dayu Li^{a, c},
Cuiyun Lu^a,
Xiaowen Sun^a

a
Heilongjiang River Fisheries Research Institute, Chinese Academy of Fisheries Sciences, Harbin 150070, China
b
College of Aqua-life Science and Technology, Shanghai Fisheries University, Shanghai 200090, China
c
Life Science and Technology Institute, Dalian Fisheries University, Dalian 116023, China

More Information

Corresponding author: E-mail address: sunxw2002@163.com (Xiaowen Sun)
Received Date: 2007-04-19
Accepted Date: 2007-08-01
Rev Recd Date: 2007-08-01

Available Online: 2008-04-11

Publish Date: 2008-02-20

Abstract

Abstract

Genome evolution arises from two main ways of duplication and reduction. Fish specific genome duplication (FSGD) may have occurred before the radiation of the teleosts. Common carp (Cyprinus carpio L.) has been considered to be a tetraploid species, because of its chromosome numbers (2n=100) and its high DNA content. Using 69 microsatellite primer pairs, the variations were studied to better understand the genome evolution (genome duplication and diploidization) of common carp from a gynogenetic family. About 48% of primer pairs were estimated to amplify duplicates based on the number of PCR amplification per individual. Segregation patterns in the family suggested a partially duplicated genome structure and disomic inheritance. This indicates that the common carp is tetraploid and polyploidy occurred by allotetraploidy. Two primer pairs (HLJ021 and HLJ332) were estimated to amplify reduction based on the number of PCR amplification per individual. One allele in HLJ002 locus and HLJ332 locus was clearly lost in the gynogenetic family and the same as in six wild populations. Segregation patterns in the family suggested a partially diplodization genome structure. A hypothesis transition (dynamic) and equilibrium (static) were proposed to explain the common carp genome evolution between genome duplication and diploidization.
- common carp,
- genome duplication,
- genome diploidization

FullText(HTML)

References(26)

References

[1]	Amores, A., Force, A., Yan, Y.L. Zebrafish hox clusters and vertebrate genome evolution Science, 282 (1998),pp. 1711-1714
[2]	Angers, B., Gharbi, K., Estoup, A. Evidence of gene conversion events between paralogous sequences produced by tetraploidization in Salmoninae fish J. Mol. Evol., 54 (2002),pp. 501-510
[3]	Crooijmans, R.P.M.A., Bierbooms, V.A.F., Komen, J. et al. Anim. Genet., 28 (1997),pp. 129-134
[4]	David, L., Jinggui, F., Palanisamy, R. et al. Mol. Gen. Genomics, 266 (2001),pp. 353-362
[5]	David, L., Shula, B., Marcus, W.F. et al. Mol. Biol. Evol., 20 (2003),pp. 1425-1434
[6]	Ferris, S.D., Whitt, G.S. Duplicate gene expression in diploid and tetraploid loaches (Cypriniformes, Cobitidae) Biochem. Genet., 15 (1977),pp. 1097-1112
[7]	Gomelsky, B.I., Emelyanova, O.V., Recoubratsky, A.V. Application of the scale covergene (N) to identification of type of gynogenesis and determination of ploidy in common carp Aquaculture, 106 (1992),pp. 233-237
[8]	Gomelsky, B.I., Emelyanova, O.V., Recoubratsky, A.V. Obtaining and some biological peculiarities of amphidiploid hybrids of crucian carp and common carp Proc. Acad. Sci. (Moscow)., 301 (1988),pp. 1210-1213
[9]	Gomelsky, B.I., Recoubratsky, A.V., Emelyanova, O.V. et al. Obtaining diploid gynogenesis in carp by thermal shock of developing eggs Problems Ichthyol., 28 (1989),pp. 168-170
[10]	Hill, C.W., Gray, J.A. Genetics, 119 (1988),pp. 771-778
[11]	Holland, P.W., Garcia-Fernandez, J., Williams, N.A. et al. Gene duplications and the origins of vertebrate development Dev. Suppl. (1994),pp. 125-133
[12]	King, S.R., Richardson, J.P. Role of homology and pathway specificity for recombination between plasmids and bacteriophage Mol. Gen. Genet., 204 (1986),pp. 141-147
[13]	Klaas, V., Wouter, D.V., John, S.T. et al. Major events in the genome evolution of vertebrates: Paranome age and size differ considerably between ray-finned fishes and land vertebrates Proc. Natl. Acad. Sci. USA, 101 (2004),pp. 1638-1643
[14]	Komen, J., Bongers, G., Richter, C.J.J. et al. Aquaculture, 92 (1991),pp. 127-142
[15]	Kuzminov, A. DNA replication meets genetic exchange: Chromosomal damage and its repair by homologous recombination Proc. Natl. Acad. Sci. USA, 98 (2001),pp. 8461-8468
[16]	Larhammar, D., Risinger, C. Mol. Phylogenet. Evol., 3 (1994),pp. 59-68
[17]	Ludwig, A., Belfiore, N.M., Pitra, C. et al. Genetics, 158 (2001),pp. 1203-1215
[18]	Meyer, A., Malaga-Trillo, E. Vertebrate genomics: more fishy tales about hox genes Curr. Biol., 9 (1999),pp. 210-213
[19]	Moxon, E.R., Rainey, P.B., Nowak, M.A. et al. Adaptive evolution of highly mutable loci in pathogenic bacteria Curr. Biol., 4 (1994),pp. 24-33
[20]	Ohno, S., Muramoto, J., Christian, L. et al. Diploid-tetraploid relationship among old world members of the fish family Cyprinidae Chromosoma (Berl.), 23 (1967),pp. 1-9
[21]	Pyatskowit, J.D., Krueger, C.C., Kincaid, H.L. et al. Genome, 44 (2001),pp. 185-191
[22]	Rayssiguier, C., Thaler, D.S., Radman, M. Nature, 342 (1989),pp. 396-401
[23]	Sidow, A. Gen(om)e duplications in the evolution of early vertebrates Curr. Opin. Gene. Dev., 6 (1996),pp. 715-722
[24]	Skrabanek, L., Wolfe, K.H. Eukaryote genome duplication—where's the evidence? Curr. Opin. Genet. Dev., 8 (1998),pp. 694-700
[25]	Taylor, J.S., van de Peer, Y., Braasch, I. et al. Comparative genomics provides evidence for an ancient genome duplication event in fish Philos. Trans. R. Soc. London B Biol. Sci., 356 (2001),pp. 1661-1679
[26]	Wolfe, K.H. Yestday's polyploids and the mystery of diploidization Nat. Rev. Gene., 2 (2001),pp. 333-341