5.9
CiteScore
5.9
Impact Factor
Volume 34 Issue 12
Dec.  2007
Turn off MathJax
Article Contents

Genetic Variation of Wild and Hatchery Populations of the Pacific Oyster Crassostrea gigas Assessed by Microsatellite Markers

doi: 10.1016/S1673-8527(07)60127-1
More Information
  • Corresponding author: E-mail address: qili66@mail.ouc.edu.cn (Qi Li)
  • Received Date: 2007-05-17
  • Rev Recd Date: 2007-06-07
  • Available Online: 2007-12-31
  • Publish Date: 2007-12-20
  • Microsatellite DNA technique was used to detect the genetic variation between five hatchery populations of the Pacific oyster from China and two wild populations from Japan. Seven microsatellite loci screened in this study showed high polymorphism in both hatchery and wild populations, as observed in an average number of allele per locus (19.1–29.9) and average expected heterozygosity (0.916–0.958). No significant difference in average allelic richness or expected heterozygosity was observed between Chinese hatchery populations and Japanese wild populations. Pairwise values and heterogeneity tests of allele frequencies showed significant genetic differentiation between all populations. According to the neighbor-joining tree constructed on the basis of theDC distance, the seven populations fell into three groups showing a clear division between hatchery and wild populations, and between the northern and southern hatchery populations. Assignment tests correctly assigned high percentages (97%–100%) of individuals to their original populations and demonstrated the feasibility of microsatellite analysis for discrimination between populations. The information obtained in this study is useful for designing suitable management guidelines and selective breeding programs for the Pacific oyster in China.
  • loading
  • [1]
    Guo, X, Ford, et al. Molluscan aquaculture in China J Shellfish Res, 18 (1999),pp. 19-31
    [2]
    Wang, R, Li, et al.
    [3]
    Bureau of Fisheries, Ministry of Agriculture, People's Republic of China
    [4]
    Hansen, MM, Mensberg, et al. Aquaculture, 153 (1997),pp. 15-29
    [5]
    Brown, BL, Gunter, et al. Evaluating genetic diversity associated with propagation-assisted restoration of American shad Conserv Biol, 14 (2000),pp. 294-303
    [6]
    Exadactylos, A, Geffen, et al. Aquaculture, 176 (1999),pp. 209-226
    [7]
    Goldstein, DB, Schlötterer, et al.
    [8]
    Li, Q, Park, et al. Aquaculture, 235 (2004),pp. 207-222
    [9]
    Lundrigan, TA, Reist, et al. Aquaculture, 244 (2005),pp. 63-75
    [10]
    Primmer, CR, Aho, et al. Hereditas, 130 (1999),pp. 277-289
    [11]
    Li, Q, Park, et al. J Shellfish Res, 21 (2002),pp. 811-815
    [12]
    Huvet, A, Boudry, et al. Anim Genet, 31 (2000),pp. 71-72
    [13]
    Magoulas, A, Gjetvaj, et al. Anim Genet, 29 (1998),pp. 69-70
    [14]
    McGoldrick, DJ, Hedgecock, et al. J Shellfish Res, 19 (2000),pp. 779-788
    [15]
    Bassam, BJ, Caetano-Anollés, et al. Fast and sensitive silver staining of DNA in polyacrylamide gels Anal Biochem, 196 (1991),pp. 80-83
    [16]
    Dieringer, D, Schlotterer, et al. MICROSATELLITE ANALYSER (MSA): a platform independent analysis tool for large microsatellite data sets Mol Ecol Notes, 3 (2003),pp. 167-169
    [17]
    Goudet, J
    [18]
    Sokal, RR, Rohlf, et al.
    [19]
    Raymond, M, Rousset, et al. GENEPOP (version1.2): population genetics software for exact tests and ecumenicism J Hered, 86 (1995),pp. 248-249
    [20]
    Weir, BS, Cockerham, et al. Estimating F-statistics for the analysis of population structure Evolution, 38 (1984),pp. 1358-1370
    [21]
    Rice, WR Analyzing tables of statistical tests Evolution, 43 (1989),pp. 223-225
    [22]
    Cavalli-Sforza, LL, Edwards, et al. Phylogenetic analysis: models and estimation procedures Evolution, 21 (1967),pp. 550-570
    [23]
    Takezaki, N, Nei, et al. Genetic distances and reconstruction of phylogenetic trees from microsatellite DNA Genetics, 144 (1996),pp. 389-399
    [24]
    Cornuet, JM, Piry, et al. New methods employing multilocus genotypes to select or exclude populations as origins of individuals Genetics, 153 (1999),pp. 1989-2000
    [25]
    Piry, S, Alapetite, et al. GeneClass2: a software for genetic assignment and first-generation migrant detection J Hered, 95 (2004),pp. 536-539
    [26]
    Smith, PJ, Ozaki, et al. New Zeal J Mar Fresh, 20 (1986),pp. 569-574
    [27]
    English, LJ, Maguire, et al. Aquaculture, 187 (2000),pp. 283-298
    [28]
    Aranishi, F, Okimoto, et al. Genetic relationship between cultured populations of Pacific oyster revealed by RAPD analysis J Appl Genet, 45 (2004),pp. 435-443
    [29]
    Aranishi, F, Okimoto, et al. Sequence polymorphism in a novel noncoding region of Pacific oyster mitochondrial DNA J Appl Genet, 46 (2005),pp. 201-206
    [30]
    Aranishi, F A novel mitochondrial intergenic spacer reflecting population structure of Pacific oyster J Appl Genet, 47 (2006),pp. 119-123
    [31]
    Smith, C, Benzie, et al. Isolation and characterization of eight microsatellite loci from silver-lipped pearl oyster Pinctada maxima Mol Ecol Notes, 3 (2003),pp. 125-127
    [32]
    Vadopalas, B, Bentzen, et al. Mol Ecol, 9 (2000),pp. 1435-1436
    [33]
    Zouros, E, Foltz, et al. Possible explanations of heterozygote deficiency in bivalve molluscs Malacologia, 25 (1984),pp. 583-591
    [34]
    Fairbrother, JF, Beaumont, et al. J Mar Biol Assoc UK, 73 (1993),pp. 647-653
    [35]
    Huvet, A, Lapègue, et al. Conserv Genet, 1 (2000),pp. 251-262
    [36]
    Callen, DF, Thompson, et al. Incidence and origin of “null” alleles in the (AC)n microsatellite markers Am J Hum Genet, 52 (1993),pp. 922-927
    [37]
    Li, G, Hubert, et al. Mol Ecol Notes, 3 (2003),pp. 228-232
    [38]
    Yu, Z, Kong, et al. J Shellfish Res, 22 (2003),pp. 31-38
    [39]
    Wang, R, Wang, et al.
  • 加载中

Catalog

    通讯作者: 陈斌, bchen63@163.com
    • 1. 

      沈阳化工大学材料科学与工程学院 沈阳 110142

    1. 本站搜索
    2. 百度学术搜索
    3. 万方数据库搜索
    4. CNKI搜索

    Article Metrics

    Article views (65) PDF downloads (0) Cited by ()
    Proportional views
    Related

    /

    DownLoad:  Full-Size Img  PowerPoint
    Return
    Return